Mercurial > repos > jpayne > snp_pipeline
annotate test-data/samples/sample1/metrics @ 25:f986ff235d69
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
| author | jpayne |
|---|---|
| date | Wed, 31 Jan 2018 13:13:17 -0500 |
| parents | eefdd97a6749 |
| children |
| rev | line source |
|---|---|
| jpayne@0 | 1 sample="sample1" |
| jpayne@0 | 2 fastqFileList="sample1_1.fastq, sample1_2.fastq" |
| jpayne@0 | 3 fastqFileSize=4818902 |
| jpayne@0 | 4 machine= |
| jpayne@0 | 5 flowcell= |
| jpayne@0 | 6 numberReads=20000 |
| jpayne@0 | 7 numberDupReads=110 |
| jpayne@0 | 8 percentReadsMapped=94.55 |
| jpayne@0 | 9 aveInsertSize=286.84 |
| jpayne@0 | 10 avePileupDepth=23.22 |
| jpayne@0 | 11 phase1Snps=46 |
| jpayne@0 | 12 phase1SnpsPreserved=32 |
| jpayne@0 | 13 snps=46 |
| jpayne@0 | 14 snpsPreserved=32 |
| jpayne@0 | 15 missingPos=0 |
| jpayne@0 | 16 missingPosPreserved=0 |
| jpayne@0 | 17 excludedSample= |
| jpayne@0 | 18 excludedSamplePreserved= |
| jpayne@0 | 19 errorList="" |