Mercurial > repos > jpayne > snp_pipeline
annotate test-data/samples/sample1/metrics @ 48:fc7a28de6aa0
planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty
| author | jpayne |
|---|---|
| date | Wed, 08 May 2019 11:10:14 -0400 |
| parents | eefdd97a6749 |
| children |
| rev | line source |
|---|---|
| jpayne@0 | 1 sample="sample1" |
| jpayne@0 | 2 fastqFileList="sample1_1.fastq, sample1_2.fastq" |
| jpayne@0 | 3 fastqFileSize=4818902 |
| jpayne@0 | 4 machine= |
| jpayne@0 | 5 flowcell= |
| jpayne@0 | 6 numberReads=20000 |
| jpayne@0 | 7 numberDupReads=110 |
| jpayne@0 | 8 percentReadsMapped=94.55 |
| jpayne@0 | 9 aveInsertSize=286.84 |
| jpayne@0 | 10 avePileupDepth=23.22 |
| jpayne@0 | 11 phase1Snps=46 |
| jpayne@0 | 12 phase1SnpsPreserved=32 |
| jpayne@0 | 13 snps=46 |
| jpayne@0 | 14 snpsPreserved=32 |
| jpayne@0 | 15 missingPos=0 |
| jpayne@0 | 16 missingPosPreserved=0 |
| jpayne@0 | 17 excludedSample= |
| jpayne@0 | 18 excludedSamplePreserved= |
| jpayne@0 | 19 errorList="" |