Mercurial > repos > jpayne > snp_pipeline

annotate test-data/samples/sample2/reads.all.pileup @ 64:b5cf2ec0c540 tip

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planemo upload
author jpayne
date Sat, 29 Jun 2024 06:56:11 -0400
parents eefdd97a6749
children
rev   line source
jpayne@0 1 gi|9626243|ref|NC_001416.1| 1 G 0 * *
jpayne@0 2 gi|9626243|ref|NC_001416.1| 2 G 0 * *
jpayne@0 3 gi|9626243|ref|NC_001416.1| 3 G 0 * *
jpayne@0 4 gi|9626243|ref|NC_001416.1| 4 C 0 * *
jpayne@0 5 gi|9626243|ref|NC_001416.1| 5 G 1 . 0
jpayne@0 6 gi|9626243|ref|NC_001416.1| 6 G 0 * *
jpayne@0 7 gi|9626243|ref|NC_001416.1| 7 C 1 . 6
jpayne@0 8 gi|9626243|ref|NC_001416.1| 8 G 0 * *
jpayne@0 9 gi|9626243|ref|NC_001416.1| 9 A 1 . B
jpayne@0 10 gi|9626243|ref|NC_001416.1| 10 C 1 . =
jpayne@0 11 gi|9626243|ref|NC_001416.1| 11 C 0 * *
jpayne@0 12 gi|9626243|ref|NC_001416.1| 12 T 0 * *
jpayne@0 13 gi|9626243|ref|NC_001416.1| 13 C 0 * *
jpayne@0 14 gi|9626243|ref|NC_001416.1| 14 G 1 . 4
jpayne@0 15 gi|9626243|ref|NC_001416.1| 15 C 1 . 8
jpayne@0 16 gi|9626243|ref|NC_001416.1| 16 G 1 . F
jpayne@0 17 gi|9626243|ref|NC_001416.1| 17 G 2 .^K. :>
jpayne@0 18 gi|9626243|ref|NC_001416.1| 18 G 3 ... ;=>
jpayne@0 19 gi|9626243|ref|NC_001416.1| 19 T 3 ... AGA
jpayne@0 20 gi|9626243|ref|NC_001416.1| 20 T 1 . G
jpayne@0 21 gi|9626243|ref|NC_001416.1| 21 T 2 N. 9A
jpayne@0 22 gi|9626243|ref|NC_001416.1| 22 T 3 ... 714
jpayne@0 23 gi|9626243|ref|NC_001416.1| 23 C 2 .. =0
jpayne@0 24 gi|9626243|ref|NC_001416.1| 24 G 1 . ;
jpayne@0 25 gi|9626243|ref|NC_001416.1| 25 C 4 .... A?>8
jpayne@0 26 gi|9626243|ref|NC_001416.1| 26 T 3 ... 75;
jpayne@0 27 gi|9626243|ref|NC_001416.1| 27 A 4 .... 19:?
jpayne@0 28 gi|9626243|ref|NC_001416.1| 28 T 4 .... 16E?
jpayne@0 29 gi|9626243|ref|NC_001416.1| 29 T 4 .... 29D>
jpayne@0 30 gi|9626243|ref|NC_001416.1| 30 T 4 .... 8D?0
jpayne@0 31 gi|9626243|ref|NC_001416.1| 31 A 3 ... F9A
jpayne@0 32 gi|9626243|ref|NC_001416.1| 32 T 4 .... =8/<
jpayne@0 33 gi|9626243|ref|NC_001416.1| 33 G 3 ... FH2
jpayne@0 34 gi|9626243|ref|NC_001416.1| 34 A 2 .. A@
jpayne@0 35 gi|9626243|ref|NC_001416.1| 35 A 2 .. G9
jpayne@0 36 gi|9626243|ref|NC_001416.1| 36 A 5 ....^K. :C209
jpayne@0 37 gi|9626243|ref|NC_001416.1| 37 A 3 ... ;=D
jpayne@0 38 gi|9626243|ref|NC_001416.1| 38 T 6 ...... @09;48
jpayne@0 39 gi|9626243|ref|NC_001416.1| 39 T 3 ... /C0
jpayne@0 40 gi|9626243|ref|NC_001416.1| 40 T 4 .... AF?B
jpayne@0 41 gi|9626243|ref|NC_001416.1| 41 T 1 . >
jpayne@0 42 gi|9626243|ref|NC_001416.1| 42 C 6 .....^K. =C90C<
jpayne@0 43 gi|9626243|ref|NC_001416.1| 43 C 7 ....... E=>2.H/
jpayne@0 44 gi|9626243|ref|NC_001416.1| 44 G 2 .. A4
jpayne@0 45 gi|9626243|ref|NC_001416.1| 45 G 4 .... BC?;
jpayne@0 46 gi|9626243|ref|NC_001416.1| 46 T 4 .... .09=
jpayne@0 47 gi|9626243|ref|NC_001416.1| 47 T 6 ...... C73=;7
jpayne@0 48 gi|9626243|ref|NC_001416.1| 48 T 5 ..... 6;GCC
jpayne@0 49 gi|9626243|ref|NC_001416.1| 49 A 6 ...... FHC0?G
jpayne@0 50 gi|9626243|ref|NC_001416.1| 50 A 5 ....^K. 7FG1=
jpayne@0 51 gi|9626243|ref|NC_001416.1| 51 G 5 ..... >9274
jpayne@0 52 gi|9626243|ref|NC_001416.1| 52 G 5 ....^K. >6G;;
jpayne@0 53 gi|9626243|ref|NC_001416.1| 53 C 8 ........ 8;<29:B=
jpayne@0 54 gi|9626243|ref|NC_001416.1| 54 G 5 ..... /@81;
jpayne@0 55 gi|9626243|ref|NC_001416.1| 55 T 6 ...... 8G0F<;
jpayne@0 56 gi|9626243|ref|NC_001416.1| 56 T 4 .... G<5>
jpayne@0 57 gi|9626243|ref|NC_001416.1| 57 T 5 ..... 6:<FA
jpayne@0 58 gi|9626243|ref|NC_001416.1| 58 C 8 ........ 5:>84155
jpayne@0 59 gi|9626243|ref|NC_001416.1| 59 C 6 ...... ;91>45
jpayne@0 60 gi|9626243|ref|NC_001416.1| 60 G 8 ........ :.?CDB>F
jpayne@0 61 gi|9626243|ref|NC_001416.1| 61 T 9 .......^K.^K. 7/:1G@AB=
jpayne@0 62 gi|9626243|ref|NC_001416.1| 62 T 7 ....... <63@C13
jpayne@0 63 gi|9626243|ref|NC_001416.1| 63 C 5 ..... :E=5F
jpayne@0 64 gi|9626243|ref|NC_001416.1| 64 T 7 ....N.. .:C14:.
jpayne@0 65 gi|9626243|ref|NC_001416.1| 65 T 9 ......... 42F;0:GE=
jpayne@0 66 gi|9626243|ref|NC_001416.1| 66 C 6 ...... F46G0C
jpayne@0 67 gi|9626243|ref|NC_001416.1| 67 T 9 ......... DFE3>F33C
jpayne@0 68 gi|9626243|ref|NC_001416.1| 68 T 10 .........^K. 8/FCF?67<D
jpayne@0 69 gi|9626243|ref|NC_001416.1| 69 C 10 .......... A5719=H069
jpayne@0 70 gi|9626243|ref|NC_001416.1| 70 G 9 ......... <8?3D?3>2
jpayne@0 71 gi|9626243|ref|NC_001416.1| 71 T 8 ........ FE;GB9<?
jpayne@0 72 gi|9626243|ref|NC_001416.1| 72 C 8 ........ G8DC==2A
jpayne@0 73 gi|9626243|ref|NC_001416.1| 73 A 6 ...... .9?>E4
jpayne@0 74 gi|9626243|ref|NC_001416.1| 74 T 6 ...... 26HC/.
jpayne@0 75 gi|9626243|ref|NC_001416.1| 75 A 10 .......... 19=2G0>6?4
jpayne@0 76 gi|9626243|ref|NC_001416.1| 76 A 9 ......... E51.4H36?
jpayne@0 77 gi|9626243|ref|NC_001416.1| 77 C 10 .......... >1.3B4F;HH
jpayne@0 78 gi|9626243|ref|NC_001416.1| 78 T 7 ....... 34E<@B@
jpayne@0 79 gi|9626243|ref|NC_001416.1| 79 T 9 ......... /622EH9B0
jpayne@0 80 gi|9626243|ref|NC_001416.1| 80 A 9 ......... EG>BBBB;.
jpayne@0 81 gi|9626243|ref|NC_001416.1| 81 A 6 ...... A;7ABH
jpayne@0 82 gi|9626243|ref|NC_001416.1| 82 T 8 ........ 6B/7/F.<
jpayne@0 83 gi|9626243|ref|NC_001416.1| 83 G 5 ..... G7;/D
jpayne@0 84 gi|9626243|ref|NC_001416.1| 84 T 10 .......... /<<A.?<?1.
jpayne@0 85 gi|9626243|ref|NC_001416.1| 85 T 9 .N.....N. 8A;@:1=F6
jpayne@0 86 gi|9626243|ref|NC_001416.1| 86 T 6 ...... GB>8AH
jpayne@0 87 gi|9626243|ref|NC_001416.1| 87 T 11 ........... E=84026?7>7
jpayne@0 88 gi|9626243|ref|NC_001416.1| 88 T 10 ...$....... A;5F?:>9.C
jpayne@0 89 gi|9626243|ref|NC_001416.1| 89 A 8 ........ ><F89971
jpayne@0 90 gi|9626243|ref|NC_001416.1| 90 T 8 ........ 02/4AH=/
jpayne@0 91 gi|9626243|ref|NC_001416.1| 91 T 9 ......... 2?8H>=?D6
jpayne@0 92 gi|9626243|ref|NC_001416.1| 92 T 11 ..........^K. 48H.@BC:=91
jpayne@0 93 gi|9626243|ref|NC_001416.1| 93 A 9 ......... =A5/ED@?B
jpayne@0 94 gi|9626243|ref|NC_001416.1| 94 A 13 ............. GD7.56D1;@6<6
jpayne@0 95 gi|9626243|ref|NC_001416.1| 95 A 11 ........... 4BE0@1>4:EB
jpayne@0 96 gi|9626243|ref|NC_001416.1| 96 A 10 .......... C.718@<.H@
jpayne@0 97 gi|9626243|ref|NC_001416.1| 97 T 11 ..........^K. B>9F7>824HA
jpayne@0 98 gi|9626243|ref|NC_001416.1| 98 A 15 ............... 5DE@HEC1>1;6F=G
jpayne@0 99 gi|9626243|ref|NC_001416.1| 99 C 12 ............ .>.A77197=.5
jpayne@0 100 gi|9626243|ref|NC_001416.1| 100 C 8 ........ 5@4G7/BB
jpayne@0 101 gi|9626243|ref|NC_001416.1| 101 C 8 ........ 8D9F6G;B
jpayne@0 102 gi|9626243|ref|NC_001416.1| 102 T 9 ......... =?D:81:C3
jpayne@0 103 gi|9626243|ref|NC_001416.1| 103 C 10 .......... HH813.0.88
jpayne@0 104 gi|9626243|ref|NC_001416.1| 104 T 11 ........... /.3738=.<1B
jpayne@0 105 gi|9626243|ref|NC_001416.1| 105 G 11 ..$......C.. 53E.=B2;1/D
jpayne@0 106 gi|9626243|ref|NC_001416.1| 106 A 9 ........^K, 19E:E0:F7
jpayne@0 107 gi|9626243|ref|NC_001416.1| 107 A 11 .........., 2;=E28/2G/.
jpayne@0 108 gi|9626243|ref|NC_001416.1| 108 A 10 ........., 2AA75D4A87
jpayne@0 109 gi|9626243|ref|NC_001416.1| 109 A 9 .N....... 7;8.62=44
jpayne@0 110 gi|9626243|ref|NC_001416.1| 110 G 12 ..........,. F@<9</>01DE2
jpayne@0 111 gi|9626243|ref|NC_001416.1| 111 A 11 .....$....,. DF08>:A719.
jpayne@0 112 gi|9626243|ref|NC_001416.1| 112 A 11 ........... =19:3FE1DH0
jpayne@0 113 gi|9626243|ref|NC_001416.1| 113 A 11 .........,. 1>A=3CG56;5
jpayne@0 114 gi|9626243|ref|NC_001416.1| 114 G 10 .NA.....,. F:18@@>6FD
jpayne@0 115 gi|9626243|ref|NC_001416.1| 115 G 15 ......N.....,.^K. >=G74G/64EAA74A
jpayne@0 116 gi|9626243|ref|NC_001416.1| 116 A 10 .......... 5<D;0H>A12
jpayne@0 117 gi|9626243|ref|NC_001416.1| 117 A 9 .......,. D<7B3H6E4
jpayne@0 118 gi|9626243|ref|NC_001416.1| 118 A 10 .......... 23941@256>
jpayne@0 119 gi|9626243|ref|NC_001416.1| 119 C 11 .........,. ?3DGEA3AAE8
jpayne@0 120 gi|9626243|ref|NC_001416.1| 120 G 10 ........,. E?7=9=H3=4
jpayne@0 121 gi|9626243|ref|NC_001416.1| 121 A 9 .$........ <8A;;9:7B
jpayne@0 122 gi|9626243|ref|NC_001416.1| 122 C 12 ..........,. /FG9B498:3=2
jpayne@0 123 gi|9626243|ref|NC_001416.1| 123 A 7 ....,.. 3HC:F4>
jpayne@0 124 gi|9626243|ref|NC_001416.1| 124 G 10 ........,. 99=0@8/:36
jpayne@0 125 gi|9626243|ref|NC_001416.1| 125 G 8 ........ 0;2H;GFE
jpayne@0 126 gi|9626243|ref|NC_001416.1| 126 T 8 ........ G5?08A>H
jpayne@0 127 gi|9626243|ref|NC_001416.1| 127 G 5 ..... 992HC
jpayne@0 128 gi|9626243|ref|NC_001416.1| 128 C 8 ........ G8<:36<.
jpayne@0 129 gi|9626243|ref|NC_001416.1| 129 T 9 ......... 6<<F8A@F7
jpayne@0 130 gi|9626243|ref|NC_001416.1| 130 G 14 ..........,... C/=<28H21CG9?9
jpayne@0 131 gi|9626243|ref|NC_001416.1| 131 A 12 .......,.... @52BF>EC.9?=
jpayne@0 132 gi|9626243|ref|NC_001416.1| 132 A 11 ........... 49?23?.<@=D
jpayne@0 133 gi|9626243|ref|NC_001416.1| 133 A 12 .......,.... C=D2D<9;?H29
jpayne@0 134 gi|9626243|ref|NC_001416.1| 134 G 10 ......,... B3D<<DBG3B
jpayne@0 135 gi|9626243|ref|NC_001416.1| 135 C 12 .......,.... C5FGB?5<>;A?
jpayne@0 136 gi|9626243|ref|NC_001416.1| 136 G 9 ......,.. 6.>D=082?
jpayne@0 137 gi|9626243|ref|NC_001416.1| 137 A 11 ......,.... 5D4EA08A?GD
jpayne@0 138 gi|9626243|ref|NC_001416.1| 138 G 10 .......... 4F61@09D<1
jpayne@0 139 gi|9626243|ref|NC_001416.1| 139 G 9 .......n. 3:E/BAA7;
jpayne@0 140 gi|9626243|ref|NC_001416.1| 140 C 6 ....G. >@6=;E
jpayne@0 141 gi|9626243|ref|NC_001416.1| 141 T 11 .......,... 0AA189B;5@9
jpayne@0 142 gi|9626243|ref|NC_001416.1| 142 T 13 N........,... CD.?3@B.3D0?4
jpayne@0 143 gi|9626243|ref|NC_001416.1| 143 T 11 .......,... G4HB0G7;553
jpayne@0 144 gi|9626243|ref|NC_001416.1| 144 T 12 .......,.... E=0H9.:F>><.
jpayne@0 145 gi|9626243|ref|NC_001416.1| 145 T 11 ........,.. 9/>FF@HA5>8
jpayne@0 146 gi|9626243|ref|NC_001416.1| 146 G 10 ..T....,.. H5.B6=GF6<
jpayne@0 147 gi|9626243|ref|NC_001416.1| 147 G 10 N......... DD7D<7A2D7
jpayne@0 148 gi|9626243|ref|NC_001416.1| 148 C 9 .......,. ?=FA2=6A@
jpayne@0 149 gi|9626243|ref|NC_001416.1| 149 C 9 .......,. @996F1;=.
jpayne@0 150 gi|9626243|ref|NC_001416.1| 150 T 9 .....,... A5:>D.488
jpayne@0 151 gi|9626243|ref|NC_001416.1| 151 C 10 .....,.... =?:55350F>
jpayne@0 152 gi|9626243|ref|NC_001416.1| 152 T 13 ........,.$... DH=7C>?A6A9BA
jpayne@0 153 gi|9626243|ref|NC_001416.1| 153 G 8 ......,. B@;53D.5
jpayne@0 154 gi|9626243|ref|NC_001416.1| 154 T 14 .......,....^K.^K. :H@69@9?4HG.E?
jpayne@0 155 gi|9626243|ref|NC_001416.1| 155 C 12 .....N...... 4299GA2E>7HE
jpayne@0 156 gi|9626243|ref|NC_001416.1| 156 G 12 ........,... 0?HC9E?F=G0A
jpayne@0 157 gi|9626243|ref|NC_001416.1| 157 T 10 .........^K. ?A@=CB8=F8
jpayne@0 158 gi|9626243|ref|NC_001416.1| 158 T 14 .C.....,...... 3?11G9G5H4/A27
jpayne@0 159 gi|9626243|ref|NC_001416.1| 159 T 12 .$........... @0.@1/4>=5F:
jpayne@0 160 gi|9626243|ref|NC_001416.1| 160 C 13 ...N...,..... .70..279299CF
jpayne@0 161 gi|9626243|ref|NC_001416.1| 161 C 14 ............,^K, :B:5E.1<.:4CD/
jpayne@0 162 gi|9626243|ref|NC_001416.1| 162 T 11 ...N,.....^K. A6>>C?;58.>
jpayne@0 163 gi|9626243|ref|NC_001416.1| 163 T 10 .......N^K.^K, 582B/2A@>0
jpayne@0 164 gi|9626243|ref|NC_001416.1| 164 T 13 .........,.., 1H?0B?;366=>0
jpayne@0 165 gi|9626243|ref|NC_001416.1| 165 C 14 .....,...,,.,^K. >H/44E=4<>35DE
jpayne@0 166 gi|9626243|ref|NC_001416.1| 166 T 16 ......,......,.. C5FFE044/7<?E3G?
jpayne@0 167 gi|9626243|ref|NC_001416.1| 167 C 18 .......,......,.., G=?:D2A.F20;8=41>;
jpayne@0 168 gi|9626243|ref|NC_001416.1| 168 T 12 ....n....,,. .F</B.@6;A>F
jpayne@0 169 gi|9626243|ref|NC_001416.1| 169 G 18 .......,.....,,.,. 61C7=3.>2A>8BHG=;.
jpayne@0 170 gi|9626243|ref|NC_001416.1| 170 T 12 ..........,. 7E??D<7220:G
jpayne@0 171 gi|9626243|ref|NC_001416.1| 171 T 11 .....,..,,. @H0:DA2G7D1
jpayne@0 172 gi|9626243|ref|NC_001416.1| 172 T 13 ...........,, /DH644?F:54A?
jpayne@0 173 gi|9626243|ref|NC_001416.1| 173 T 16 ............,.,. 54EEEB965C2=EF?G
jpayne@0 174 gi|9626243|ref|NC_001416.1| 174 T 15 ...,.........,. >:;00.=9821?/?4
jpayne@0 175 gi|9626243|ref|NC_001416.1| 175 G 14 .........,,.,. 32;12?.C7821B1
jpayne@0 176 gi|9626243|ref|NC_001416.1| 176 T 14 ..........,,,. 2A?E5E;G7>@>/8
jpayne@0 177 gi|9626243|ref|NC_001416.1| 177 C 14 ......,..,..,. 2E13@AD/G/H2C@
jpayne@0 178 gi|9626243|ref|NC_001416.1| 178 C 14 ....,.....,.,. /A<H=772FE/<56
jpayne@0 179 gi|9626243|ref|NC_001416.1| 179 G 16 ..........,..,.. ?:5.9HD..;83G<7F
jpayne@0 180 gi|9626243|ref|NC_001416.1| 180 T 17 ......,...,....^K.^K, ;E=@H22H8BH/EC7=A
jpayne@0 181 gi|9626243|ref|NC_001416.1| 181 G 18 .....,.....,,..,.. B6366:CC25:4F;A=?6
jpayne@0 182 gi|9626243|ref|NC_001416.1| 182 G 16 ..........,.,.,, D6>6:8=B80E8>..B
jpayne@0 183 gi|9626243|ref|NC_001416.1| 183 A 17 ...........,...,, 4=H@729A99H15@@;6
jpayne@0 184 gi|9626243|ref|NC_001416.1| 184 A 16 ....,......,,... :8A;CB0?@A;:8=D/
jpayne@0 185 gi|9626243|ref|NC_001416.1| 185 T 19 ......,.....,..,... 67AA<=FG.1D4;CDB?@<
jpayne@0 186 gi|9626243|ref|NC_001416.1| 186 G 20 ....,......,,.A,..,, .;E5==6:C9.D58>4>@3E
jpayne@0 187 gi|9626243|ref|NC_001416.1| 187 A 16 ....,.....,...., 2=0>@HC<8.050;98
jpayne@0 188 gi|9626243|ref|NC_001416.1| 188 A 19 ......$......,....,, >7G3DAA1G7A055.A@89
jpayne@0 189 gi|9626243|ref|NC_001416.1| 189 C 18 .....,.......,..., /HH>>G7..BBG6FA545
jpayne@0 190 gi|9626243|ref|NC_001416.1| 190 A 19 ....,.....,.,..,,,^), 047GGB949?A:D4B2G3@
jpayne@0 191 gi|9626243|ref|NC_001416.1| 191 A 14 ....,.....,,,, :G3<41@>?3C88@
jpayne@0 192 gi|9626243|ref|NC_001416.1| 192 T 19 ..N....,........,,, B/.7@;74HH6DG0C86?=
jpayne@0 193 gi|9626243|ref|NC_001416.1| 193 G 16 ..........,..,,, 5988EG5565G6497=
jpayne@0 194 gi|9626243|ref|NC_001416.1| 194 G 20 ....,......,....,,.^K, H?F83>7BHBFDBE2:AG41
jpayne@0 195 gi|9626243|ref|NC_001416.1| 195 A 21 ..........,n..,..,,,. H:C>;A5G;H>HB=?0<G0B>
jpayne@0 196 gi|9626243|ref|NC_001416.1| 196 A 24 ......,......,.....,,,., 3AC.><8<2@05=F;@5>@2F2;:
jpayne@0 197 gi|9626243|ref|NC_001416.1| 197 G 17 ....,..,,....,,., /BC51=?H=HDH74;CE
jpayne@0 198 gi|9626243|ref|NC_001416.1| 198 T 20 ..........,,...,,.,^K, A=9=7?54D5G/19634H3.
jpayne@0 199 gi|9626243|ref|NC_001416.1| 199 C 17 ........,....,,,, 9;>56>28BH5H@4.E6
jpayne@0 200 gi|9626243|ref|NC_001416.1| 200 A 20 ...$,.....,..,,,.,,.^K. H;=;4:8D82./247E34F0
jpayne@0 201 gi|9626243|ref|NC_001416.1| 201 A 16 ...,,,.,..,,,,.^K, ;>92D1?6CED7./?4
jpayne@0 202 gi|9626243|ref|NC_001416.1| 202 C 17 .....,,.,..,,..,^K. 3EH:F679H=857@9H9
jpayne@0 203 gi|9626243|ref|NC_001416.1| 203 A 22 ........,,....,,,.,.,. :2G9FBB?392FD2C:>AE186
jpayne@0 204 gi|9626243|ref|NC_001416.1| 204 A 22 .....,....$.,..,..,,,,. <@>9HDH0700@:B@5;14<E6
jpayne@0 205 gi|9626243|ref|NC_001416.1| 205 A 19 .......,..,,,,,,... 6/9@84174:?9A;4B/>E
jpayne@0 206 gi|9626243|ref|NC_001416.1| 206 A 18 .,.....,...,,,.,.. 44;G45D56C0@H97<0C
jpayne@0 207 gi|9626243|ref|NC_001416.1| 207 A 21 ...,...,,.$,..,,,,,.., =;?55;.E>=2HG5@4B==??
jpayne@0 208 gi|9626243|ref|NC_001416.1| 208 G 16 ...,.,,.,,,,..,. H54AA510/.;CG@B6
jpayne@0 209 gi|9626243|ref|NC_001416.1| 209 C 23 ...,.....,....,,,.n..,. D==.C15C>9E;G@7;29=HA1B
jpayne@0 210 gi|9626243|ref|NC_001416.1| 210 A 16 ..,.....,,,,,.,, 9<H:=3<53E6441.2
jpayne@0 211 gi|9626243|ref|NC_001416.1| 211 G 24 ..........,,.,..,,,..,.. F>7C4HGE5?>F@4C.;E.2=06E
jpayne@0 212 gi|9626243|ref|NC_001416.1| 212 C 25 ..,....,.,..,,,,,,.,.,.., H=;07?BAF=9;;1/GC;E??4=99
jpayne@0 213 gi|9626243|ref|NC_001416.1| 213 T 22 ......N,,.,.,,,,.,.G., 2<GC@>/G<A;A0<8H.63@02
jpayne@0 214 gi|9626243|ref|NC_001416.1| 214 G 22 ...,....,,...,,,.,.,., AGF;.;3/:E8F<<F6?/G8.C
jpayne@0 215 gi|9626243|ref|NC_001416.1| 215 G 23 ....,.....,...,,,..,.., G8@B6BA.A0495;E00F.DBA2
jpayne@0 216 gi|9626243|ref|NC_001416.1| 216 C 22 ........,..,,,,,,..,.. 7=;HF9:1FF/B/7DB2?8G0F
jpayne@0 217 gi|9626243|ref|NC_001416.1| 217 T 23 .....,G..A.,,,,,.,.,.,. 6H>?H8C9FD6>B7H:0A=:0A@
jpayne@0 218 gi|9626243|ref|NC_001416.1| 218 G 24 ........,,.,...,,,.,,.., 5AD;7DB0@B<:AEH/@C.>4:=/
jpayne@0 219 gi|9626243|ref|NC_001416.1| 219 A 27 ..,.....,,.,..,,,,,,.,.,.,. 320C:=G87.25B:85;>A=E5BF7H8
jpayne@0 220 gi|9626243|ref|NC_001416.1| 220 C 23 ...........,,.,.,.,.... 1DH@=3D795<:H9=114H1A7H
jpayne@0 221 gi|9626243|ref|NC_001416.1| 221 A 18 .....,..,,,,,,.,.^K. 0BA2=C4DB7EH@F?C1D
jpayne@0 222 gi|9626243|ref|NC_001416.1| 222 T 29 .....,....,,,..,,,.,,.,..,... >0/?HFF185=28@<CH:1@;=E@3A181
jpayne@0 223 gi|9626243|ref|NC_001416.1| 223 T 31 ....,.....,,.,...,,,,,n.,..,... B@B:B904/D:></5F>:G/G@484<.69HA
jpayne@0 224 gi|9626243|ref|NC_001416.1| 224 T 20 .......,.,..,,,,.... /GH:F29@8CH44E1/45;D
jpayne@0 225 gi|9626243|ref|NC_001416.1| 225 T 22 ........N,..,,,,,.,.,. 04/D7@4310=G85AG:=G7?9
jpayne@0 226 gi|9626243|ref|NC_001416.1| 226 C 24 ........,,..,,.,.,N..,.. 57=HE=B./A40;?>E6HG=AC@2
jpayne@0 227 gi|9626243|ref|NC_001416.1| 227 G 21 ...,.....,..,a,..,,.. =A:GE20=><D.;C72/.CGA
jpayne@0 228 gi|9626243|ref|NC_001416.1| 228 G 24 ........,.,...,,,.,,..,. A9/8H4GF=6F/C15;33=FDG@>
jpayne@0 229 gi|9626243|ref|NC_001416.1| 229 T 22 ....,.....,.,.,,..,... =64D436A@/=DC6<0;B8>0=
jpayne@0 230 gi|9626243|ref|NC_001416.1| 230 G 24 ...,.......,..,,,..,.,.. 18?6?/>EC;FD=H?=06EB;60H
jpayne@0 231 gi|9626243|ref|NC_001416.1| 231 C 26 ..,.....,,,$...,,.,.,.,.,.. A920F9A.122A7;>.906E:FCD:/
jpayne@0 232 gi|9626243|ref|NC_001416.1| 232 G 26 ....,.....,..,,,,.,..,.... 0@FB/=G=B7782>4.66@906.C27
jpayne@0 233 gi|9626243|ref|NC_001416.1| 233 A 25 ....,..,,...,,,.,.,.,.... :>/E9@C58G8E26G7:F=.>C:5.
jpayne@0 234 gi|9626243|ref|NC_001416.1| 234 G 22 ..........,.,,.,..,... 8@=2A5.<<G:B1<H@95;493
jpayne@0 235 gi|9626243|ref|NC_001416.1| 235 T 23 .....,,..G.,,.,,,....N^K. @<.@DF643>6EH7@9;BGC/9E
jpayne@0 236 gi|9626243|ref|NC_001416.1| 236 A 24 ...,..,....,,,,,.,..,... 349F21@:B4<D0=725B>DH6C9
jpayne@0 237 gi|9626243|ref|NC_001416.1| 237 T 31 ....,......,...,,,.,,..,......^K, @98C?F>@:..B6/DG0HB6?@;;9H.:/7@
jpayne@0 238 gi|9626243|ref|NC_001416.1| 238 C 24 .........,,...,,,.,..... 63E/@.CF0>5@3@FG08A81DF0
jpayne@0 239 gi|9626243|ref|NC_001416.1| 239 C 23 ...,....,,..,,,.,....., ;CD@<567C@FB61@EE1726/3
jpayne@0 240 gi|9626243|ref|NC_001416.1| 240 G 24 ..,.....,.,,,.,N,.,..,.. 31E?D>4H>@DG=H?D2AD;.EE0
jpayne@0 241 gi|9626243|ref|NC_001416.1| 241 T 29 ...,.$.$...,....,.,,.,.,..,.... >9HEEE<<C0>G51.7?>./C=4C>D.5D
jpayne@0 242 gi|9626243|ref|NC_001416.1| 242 A 29 .....,...,,...,,,,,....,...., 3A0;610:B/.FGD;B/@/36?B8E58<E
jpayne@0 243 gi|9626243|ref|NC_001416.1| 243 C 25 ..,...,,...,,,.,,.,...... =:<=?@?:74E8<B/@778<BGA27
jpayne@0 244 gi|9626243|ref|NC_001416.1| 244 C 22 ..,..,,..,,.,...,...., ??>>H=74DC;=83DH@B/B10
jpayne@0 245 gi|9626243|ref|NC_001416.1| 245 A 28 ...,....,...,,.,,..,..,...., A07=:@7.=C.;=9;2B.316?2;GB;@
jpayne@0 246 gi|9626243|ref|NC_001416.1| 246 T 21 .,....,...,,.,..,.... /@?:H>:=992.=C71AG;C2
jpayne@0 247 gi|9626243|ref|NC_001416.1| 247 T 24 ...,...,,...,,,.,,,...., ;29AFED2E<<H??8H0CH2?96G
jpayne@0 248 gi|9626243|ref|NC_001416.1| 248 C 23 ....,,...,.,,.,.,...... 27<:CE>A98@::169D<10?A/
jpayne@0 249 gi|9626243|ref|NC_001416.1| 249 A 19 ...C.,,..,.,.,,.... E113H@6A5?34FE0C9.9
jpayne@0 250 gi|9626243|ref|NC_001416.1| 250 G 17 ...,...,.,,,....^K. 758B08/.:6000=G>E
jpayne@0 251 gi|9626243|ref|NC_001416.1| 251 A 23 .....,..,..,..,..,...., CG=CE;.G4:/;=83;=0:1?/1
jpayne@0 252 gi|9626243|ref|NC_001416.1| 252 A 21 ....$,...,.,,,,,..,.$.. 0G35B4:<//DF38B@H:B;A
jpayne@0 253 gi|9626243|ref|NC_001416.1| 253 C 24 ...,......$,,,.,.,.,.,.^K.^K, 5.58DBDE556:<EC==?1A9437
jpayne@0 254 gi|9626243|ref|NC_001416.1| 254 T 23 ...,...,,.,.,,.,.,...,. D9B400689=C/=4:<6@GGG.7
jpayne@0 255 gi|9626243|ref|NC_001416.1| 255 G 24 .,...,,.,,.,..,..,..,.,. @4./<0@01?4;;3.AF546>87E
jpayne@0 256 gi|9626243|ref|NC_001416.1| 256 G 23 ..,..,...,,.,,.,.,...., 1;/ED@/0510BF7C1=<6F4=7
jpayne@0 257 gi|9626243|ref|NC_001416.1| 257 C 22 ..,..,,.,,.,.,.,.,..,. 7/G454BF/F?H717:@=.37F
jpayne@0 258 gi|9626243|ref|NC_001416.1| 258 A 27 ...,....,.,,,.,,.,,.....,,. EDC@5:6E075=EG@</71857./B69
jpayne@0 259 gi|9626243|ref|NC_001416.1| 259 G 26 ....,,..,,,.n.,..,.....,,. ?A?CE10689G8420=DH901H<<73
jpayne@0 260 gi|9626243|ref|NC_001416.1| 260 G 25 ..N...,,...,,.,,,...,..,. ?@?<909?@/:87E17=>GH75@75
jpayne@0 261 gi|9626243|ref|NC_001416.1| 261 A 29 ...,...,,...,$,.,.,,.,.,..,,.. F<86/HC/0<>087@6B.32?CEE:D:;H
jpayne@0 262 gi|9626243|ref|NC_001416.1| 262 A 21 ...,,.,,,,.,.,,....,. @>4C0G?G>97:122?;<@21
jpayne@0 263 gi|9626243|ref|NC_001416.1| 263 C 23 .,...,..,.,...,..,.,,.. A23:F>2@>E1079./0B;;145
jpayne@0 264 gi|9626243|ref|NC_001416.1| 264 A 28 .,...,,...,,.,,.,.,,...,..,. >@1155</4?6607CE/D37C66=@;5/
jpayne@0 265 gi|9626243|ref|NC_001416.1| 265 G 24 ..,..,...,.,..,..,...,.. F/2=?94D>;?CED3F5F5637=<
jpayne@0 266 gi|9626243|ref|NC_001416.1| 266 G 26 ...,....,,.$,,.,.,..,...,., @B5737459@0>@F:B??B@>1@5F1
jpayne@0 267 gi|9626243|ref|NC_001416.1| 267 G 23 .$..,..$,,,..,..,..,..,.. ?.=.A796DE@EDA.AD=:<<FB
jpayne@0 268 gi|9626243|ref|NC_001416.1| 268 A 22 .....,,..,,,...,.,.,.^K, 36>:@HC:C;>;@<C:GB62FB
jpayne@0 269 gi|9626243|ref|NC_001416.1| 269 A 26 ..,...,,.,,.,.,..,.....,.. 42GE>:HDEE@1=7@D=EG2H7940;
jpayne@0 270 gi|9626243|ref|NC_001416.1| 270 T 24 ,..,.,,,,.,.,.,.,...,.., C<ED2:3057C994H0.4H627A1
jpayne@0 271 gi|9626243|ref|NC_001416.1| 271 G 19 ..,..,..,.,.,...... 310@:75;7.1;DB89?;A
jpayne@0 272 gi|9626243|ref|NC_001416.1| 272 C 18 .,...,,,,,.,.,.... <1::5A<=H6=82DB2@:
jpayne@0 273 gi|9626243|ref|NC_001416.1| 273 C 17 .,.,,,..,..,.,,.^K. 6G2GG114@2=A>H5>>
jpayne@0 274 gi|9626243|ref|NC_001416.1| 274 C 20 ..,,.,,.,...,.,,.,.^K. H.6H@F59<A?4./12A05;
jpayne@0 275 gi|9626243|ref|NC_001416.1| 275 G 26 .,..,.,,,.,...,....,,.,.., 4;5=A>>.1G.4=3DD<61@2H7H5C
jpayne@0 276 gi|9626243|ref|NC_001416.1| 276 T 28 .,.,a..,.,.,..,..,..,,.,,,., 1=/:2;0/2@.5EF:7;E::F60=B08:
jpayne@0 277 gi|9626243|ref|NC_001416.1| 277 T 26 ...,,.,...,..,...,,..,,.., 59:8;HHDD2B>9058=63.>D3943
jpayne@0 278 gi|9626243|ref|NC_001416.1| 278 C 30 .,..,,..,,.,.n.....,...,,,.,,. >B8HF<B/HB>AG/6H26H02@G2GF3>3:
jpayne@0 279 gi|9626243|ref|NC_001416.1| 279 T 23 .,..,.,,.,.,..,...,,.., 8;E1G7E318012AA85DA0EE1
jpayne@0 280 gi|9626243|ref|NC_001416.1| 280 G 23 .,,,,.,NC,...,..,,..,.^K, 9HD08E;A;D39:=F2;@:F9AB
jpayne@0 281 gi|9626243|ref|NC_001416.1| 281 C 27 ,..,,.,g.,.$,..,..,..,,.,.., 8F0B?90==360:6/@@60;8C0GH=8
jpayne@0 282 gi|9626243|ref|NC_001416.1| 282 G 23 n.c,,,.,..,..,...,,,.,, EH.7441712<F4@2433/0@?<
jpayne@0 283 gi|9626243|ref|NC_001416.1| 283 A 20 ,..,,,.,,..,..,,.,., A<H2C6<HHD1=.3/.=98.
jpayne@0 284 gi|9626243|ref|NC_001416.1| 284 G 25 .,...,,,,.,...,..,,,.,.,, 501FD4A2HA64G/>E=5@88<G5;
jpayne@0 285 gi|9626243|ref|NC_001416.1| 285 G 23 ,...,.,,.,,.,......,,., 6;44?0/@;?63A=A486G9F0D
jpayne@0 286 gi|9626243|ref|NC_001416.1| 286 C 23 ,..,.,,,..,,...,.,.,..^K, HFD2HE4/;@F0@996?;9>6D<
jpayne@0 287 gi|9626243|ref|NC_001416.1| 287 G 24 .,..,,,,.,.......,,...,^K. 77H>GG>C.7>=2?@D?GHA836=
jpayne@0 288 gi|9626243|ref|NC_001416.1| 288 G 29 .,.,,.,.,...,...,,.,.,.T,,.,. ;87C5D;BC>H9FE0H3D/8F=4F:0F9E
jpayne@0 289 gi|9626243|ref|NC_001416.1| 289 T 27 ..$.,,.,,.....,..,,.,,..,,., @6A=91=/8=96E8449C/51?8EF:/
jpayne@0 290 gi|9626243|ref|NC_001416.1| 290 G 23 .,.,.,.,,..,...,,.,..,. @H<9GDE4>717D;G/D17?32<
jpayne@0 291 gi|9626243|ref|NC_001416.1| 291 G 27 ,..,.,,,....,..,,.,,..,.,., 2/==BD.8=.7BDH;;H.B:87G?8DA
jpayne@0 292 gi|9626243|ref|NC_001416.1| 292 C 18 .,.,,,.,,..,,.,,., B>;F5C21.//4E6A::@
jpayne@0 293 gi|9626243|ref|NC_001416.1| 293 A 22 .,...,,...,...,,,..,.. 96D4BA:;B:050>@4DD;=70
jpayne@0 294 gi|9626243|ref|NC_001416.1| 294 A 34 .,..,$,.,,,.,,..,.....,,.,,,..,.,., ?@2@AFE3B4DG=4F1BA832B?E<H9>=?;F:>
jpayne@0 295 gi|9626243|ref|NC_001416.1| 295 G 23 ...,.,,,..,..,.,....,., @:::51AC=8G;A6@3=C793;G
jpayne@0 296 gi|9626243|ref|NC_001416.1| 296 G 25 ..,,.,.,..,..,,.,.,,..,., 7DAH34351CH9763.=D237/@24
jpayne@0 297 gi|9626243|ref|NC_001416.1| 297 G 27 .,.,.,,,.,..,.,..,.,,,.,,., 67A6E;136>7>B848>8?1873/>=C
jpayne@0 298 gi|9626243|ref|NC_001416.1| 298 T 29 ..,$,,,N,$,.,.,...,.,.,,..,,.., ?DE/.9E87H3/><D.G95:0:HH5/136
jpayne@0 299 gi|9626243|ref|NC_001416.1| 299 A 22 ...,,.,...,.,,..,.,.,. D;=D8@92F8D@H0/F>?;G:A
jpayne@0 300 gi|9626243|ref|NC_001416.1| 300 A 19 .,...,.,.,....,.,,. ./D7E:>:?@FF.@7H@2F
jpayne@0 301 gi|9626243|ref|NC_001416.1| 301 T 21 ....,..N...,,,,.,,.,. @G?9>21>EG:A?9B=;E37E
jpayne@0 302 gi|9626243|ref|NC_001416.1| 302 G 25 .,.,.,.......,,.,,.,.,.,. 64F8=;FC>EG:1>14@=B7C04E4
jpayne@0 303 gi|9626243|ref|NC_001416.1| 303 A 27 .,,,,..,...,...,,.,.,.,,.,. =B>E=<</G?749F2547H351DG7?8
jpayne@0 304 gi|9626243|ref|NC_001416.1| 304 G 26 ,.,,.,........,.,,,.,,...^K, 922C/103B2B4:1DA3/46AG/>AB
jpayne@0 305 gi|9626243|ref|NC_001416.1| 305 G 20 .,.,,..,..,.,.,..,,^K. 7G>A::H5H8=6G1AA?6:E
jpayne@0 306 gi|9626243|ref|NC_001416.1| 306 T 29 .g.$..,,,.....,.,,,.,,..,,,.,. 8.<BG067>D?G92=B11F5/G.ED.8H=
jpayne@0 307 gi|9626243|ref|NC_001416.1| 307 G 25 .,..,,,.,.,...,.,.,,.,.,, 117>>5.3;9E5928738/>;GE.?
jpayne@0 308 gi|9626243|ref|NC_001416.1| 308 C 27 .,.,,,,..,...,.,,,.,,.,.,.^K, @:@ED7=?B7C=:1>@7;6:0EDA;.;
jpayne@0 309 gi|9626243|ref|NC_001416.1| 309 T 28 ...,...,....,,..,,..,,.,,.,^K. G14::355:EFBF7GA<ED?5?=:B5@0
jpayne@0 310 gi|9626243|ref|NC_001416.1| 310 T 23 ...,,,,,....,,...,,..,. F>.8BHC4A<//CH;CCFC>HE0
jpayne@0 311 gi|9626243|ref|NC_001416.1| 311 T 27 N..,,.,.,.,..,,$,,.,.,.,.,,C /3<:;A=6:GD=021B2<B=944F:10
jpayne@0 312 gi|9626243|ref|NC_001416.1| 312 A 29 ...,,.,.,..,..,,..,,.,.,.,,., B.?1DAC@>5C9:;<C515/4;;?/3?8@
jpayne@0 313 gi|9626243|ref|NC_001416.1| 313 T 24 ..,,,.,.....,,.,..,.,... CG@50199:@>H:/6G819.H/73
jpayne@0 314 gi|9626243|ref|NC_001416.1| 314 G 30 .,.,,.,..,A.$....,,,,.,,...,,.. 29C<?:G.<74:C>9D/37;..3>D.DB1/
jpayne@0 315 gi|9626243|ref|NC_001416.1| 315 A 23 ,.,,,..,......,,.,.,.,. 4H7F42179=<<HAGC56F.=;B
jpayne@0 316 gi|9626243|ref|NC_001416.1| 316 C 25 .,.,,.,.,...,..,.,,..,,.. 2.;3>CF04<.E210D112C05DFC
jpayne@0 317 gi|9626243|ref|NC_001416.1| 317 T 24 ,..,,N.....,,..,,.,.,..^K, 9B9.>E438/E=99B1F50GB>FE
jpayne@0 318 gi|9626243|ref|NC_001416.1| 318 C 21 .,,.,.,.,,,,..,.,..., G6./<A>@?.3=;0/:2/F=>
jpayne@0 319 gi|9626243|ref|NC_001416.1| 319 T 22 ,,.,.,.,.,.,,..,..,.., :5?B>G?53<?8.;:@8>E19F
jpayne@0 320 gi|9626243|ref|NC_001416.1| 320 G 28 .,,,$,,A,..,..,...,,.,.,.,.,. CE2@F9BB?>/=FHEEBH>;3:26CE7E
jpayne@0 321 gi|9626243|ref|NC_001416.1| 321 C 30 .,..,..,..,.,,..,,.,,.,,.,.,., C<A9H8191:G>=?16B579HEE3:1E//=
jpayne@0 322 gi|9626243|ref|NC_001416.1| 322 C 26 .,,N..,.N,..,..,..,,,.,,., E0//B85;>.0597FD14@99>32E/
jpayne@0 323 gi|9626243|ref|NC_001416.1| 323 G 31 .,..,,.,..,.N,,.,..,.,.,.,.,.., HA.5>;>4<B0.1.4B:CF?AAFB23.:8?D
jpayne@0 324 gi|9626243|ref|NC_001416.1| 324 C 24 .,N,,.,...,,,.n.,,.,.,., 9EE?/3FB::?A9<=1G;H:403A
jpayne@0 325 gi|9626243|ref|NC_001416.1| 325 C 26 ,.,.,,.,..,.,,..,.,.,,..,^K. 2.?@:B<?/9CD=.E=BG9EHBG.68
jpayne@0 326 gi|9626243|ref|NC_001416.1| 326 G 25 ......,....,..,..,,N,,... ?=A1.249;FA>DDD@B=;1BGFA=
jpayne@0 327 gi|9626243|ref|NC_001416.1| 327 T 25 .,..,..,.,.,,....,..,..,. ?4=B802FE?1D62C@?/65:3H71
jpayne@0 328 gi|9626243|ref|NC_001416.1| 328 C 28 .,,...,.,..,,,..,,.,..,..,.^K, >.E>597<:0?6F=A8;>A0A;A1F2;3
jpayne@0 329 gi|9626243|ref|NC_001416.1| 329 A 32 .,.,n.,....,..,..,,..,.,,.,.,.., F?F8195:.<9/56<0:11AEE6.3;F?8614
jpayne@0 330 gi|9626243|ref|NC_001416.1| 330 T 27 ,..,,.,.,...,...,,.,.,,..,. GE=C04@1<;27517==:>H0DG?9D8
jpayne@0 331 gi|9626243|ref|NC_001416.1| 331 A 20 ,..,.,..,....,.,,.., .9@6261:=BA3E4@43154
jpayne@0 332 gi|9626243|ref|NC_001416.1| 332 A 28 .,.,.,..,.,..,,..,,.,,,.,.n. 2=:G?7E/GH:E7@=>1B./:25.G4D;
jpayne@0 333 gi|9626243|ref|NC_001416.1| 333 A 27 ,.,,.,...,.,,.,,.,,..,,,... :.D7:8>0;BD<B1<H=.G:3<5?52=
jpayne@0 334 gi|9626243|ref|NC_001416.1| 334 A 22 ,.,,.,...n.,..,...,.., DF>G1E=F5G==B2C0@3@/B7
jpayne@0 335 gi|9626243|ref|NC_001416.1| 335 T 25 ..,,..,..,.,.N,.,$.,.,.... ?C?4<F4.A?;G6A387<G99EH><
jpayne@0 336 gi|9626243|ref|NC_001416.1| 336 G 30 .,.,,,..,..,.,,.,,..,,..,..,., HA>C/093H8.4@D>3293G5=0;54FGF4
jpayne@0 337 gi|9626243|ref|NC_001416.1| 337 G 26 ...,..,.,,,.,.,,...,,..,., B?C48?61H0=;>4.46/5=09HAC7
jpayne@0 338 gi|9626243|ref|NC_001416.1| 338 T 23 ,..,......,..,,.,.,.,,. /0DF<:5F6A/36G54>@FD69B
jpayne@0 339 gi|9626243|ref|NC_001416.1| 339 A 33 .,..,,,..,..,...,,..,,.,..,..,.,, :9A5>.0D2A>0A/@AH=ED9765/6GE?G.5:
jpayne@0 340 gi|9626243|ref|NC_001416.1| 340 T 30 ..,,,.,..,.,..,,.,,..,.,...,,, //A.9681A.<DH38=DD9C5EF0.B=A3A
jpayne@0 341 gi|9626243|ref|NC_001416.1| 341 G 26 .$..,,.,.,..,,.,..,.,.,,,,, D@<G=E8.A?/?H1/G1GH0;H:BGD
jpayne@0 342 gi|9626243|ref|NC_001416.1| 342 C 30 ..,,,.,..,.,,.,..,N.,.,...,.,^K, AEE10HCB/?<G86FG@8<D?1620A3CD<
jpayne@0 343 gi|9626243|ref|NC_001416.1| 343 C 26 ,..,.,...,,,.,.,.,.,..,.,, /E:GH75@1HD?.03BD3.E?BE/0>
jpayne@0 344 gi|9626243|ref|NC_001416.1| 344 G 28 ,.,....,..,.n,..,,,.,.,.,.,, =885HG/A.697BB:1>9B>G=@933?5
jpayne@0 345 gi|9626243|ref|NC_001416.1| 345 A 24 ,..,....,,,,,..,.,....,. /=EC1@84G0.0H:@HDC:=B?05
jpayne@0 346 gi|9626243|ref|NC_001416.1| 346 A 31 ,.,,....,..,,..,,.,.,.,.,.,.n,. .B0B96GA/4/7G9;?4151:9E9=264A12
jpayne@0 347 gi|9626243|ref|NC_001416.1| 347 A 27 ,.,.,...,,.T,,.,....,.,.,,. 76H@C@C0@G;:..B90:/6;B7;EDD
jpayne@0 348 gi|9626243|ref|NC_001416.1| 348 G 25 ,..,,...,..,.,.,....,,,,. 2<D0<653BG8.5>:75G;;EG?/B
jpayne@0 349 gi|9626243|ref|NC_001416.1| 349 G 30 ,..,,.,..,,..,..,..,.,,..,.,,. :H<C>/GD6H?<B@D>?2B7.A<5/6.D::
jpayne@0 350 gi|9626243|ref|NC_001416.1| 350 G 30 ,,,,....,.,..,..,,$..,..$,.,.,,, G.<C3:89.E=GA<@E;86E8;@7HF2=HE
jpayne@0 351 gi|9626243|ref|NC_001416.1| 351 A 29 ,..,,.,...,.,,.,,$.,.....,,,.^K. @1:;6:00;C64@AG>C?05<C6F34621
jpayne@0 352 gi|9626243|ref|NC_001416.1| 352 T 25 .,.,...,.,,,..,.,,..,,.,. :F@8:D4>:9./4A.84A0D/E54B
jpayne@0 353 gi|9626243|ref|NC_001416.1| 353 G 21 ,.,..,.,...,.,,.,..,. 2=CG9:H906@D@379AF;E?
jpayne@0 354 gi|9626243|ref|NC_001416.1| 354 C 29 ,..,,.,....,....,..,,,.,.,,.. B2FE13HD0.<4B<@60.:F1CCG;92E/
jpayne@0 355 gi|9626243|ref|NC_001416.1| 355 T 33 ,..,....,..,..,..a...,,..,.,.,..^K, >8HG8=6=49=ED@/5=8BDB:@@BD6A.=6AE
jpayne@0 356 gi|9626243|ref|NC_001416.1| 356 G 30 ,..,.....,,..,..,,..$,,,,.,,.., 1=2DFGC28;F7:9.FF3/E5/=7F01H/A
jpayne@0 357 gi|9626243|ref|NC_001416.1| 357 A 27 ,..,...,..,..,,.,.,,.,,,.., C:;;BE>52A98962;:2E1/.5H.73
jpayne@0 358 gi|9626243|ref|NC_001416.1| 358 A 25 .....,..,,..,,..,.,.,,.., 34BB<5B9?/5F05E03@>/<>?7<
jpayne@0 359 gi|9626243|ref|NC_001416.1| 359 A 26 ,..,...,..,,..,,..,,,.,.., ED9<49F1<0?;<?E8?2B/=G0=.2
jpayne@0 360 gi|9626243|ref|NC_001416.1| 360 T 27 ,..,....,..,,...,.,,,,.,.., >E562D?7E5H<34DD.B4HED3=8F4
jpayne@0 361 gi|9626243|ref|NC_001416.1| 361 T 19 .-2GA,-2ga,.-2GA,-2ga.-2GA.-2GA,-2ga,-2ga.-2GA,-2ga.-2GA.,-2ga,.-2GA,-2ga,-2ga.-2GA />C6E47.G2AH1<DFG:H
jpayne@0 362 gi|9626243|ref|NC_001416.1| 362 G 2 ,.$ /D
jpayne@0 363 gi|9626243|ref|NC_001416.1| 363 A 0 * *
jpayne@0 364 gi|9626243|ref|NC_001416.1| 364 G 0 * *
jpayne@0 365 gi|9626243|ref|NC_001416.1| 365 A 1 . /
jpayne@0 366 gi|9626243|ref|NC_001416.1| 366 A 22 ......,.....,.,,,,..,, ;7937:1/1/0:::41382/:A
jpayne@0 367 gi|9626243|ref|NC_001416.1| 367 C 32 ,..,....,.,..,...,.,.,,,,,.,,.,^K, .FG1C2;215>H31.:/E/<A5=?;DA>=D8/
jpayne@0 368 gi|9626243|ref|NC_001416.1| 368 G 27 ,...,.,,.,..,,.,,,.,,..,.,, :@;11:912B1/CGE6462C/?/DG2;
jpayne@0 369 gi|9626243|ref|NC_001416.1| 369 A 28 ,..,..,$.,.,..,..,,.,.,,..,., D94H861A2>1A8<0/4;8FB5HCCCB/
jpayne@0 370 gi|9626243|ref|NC_001416.1| 370 A 24 .,..,..,..,.,.,,,,..,N,, <E;F8D/18E./71/9@0?.80.?
jpayne@0 371 gi|9626243|ref|NC_001416.1| 371 A 22 ..,.....,...,.,,.,,,,, EE39/>F>1=/@3=>10C?C/H
jpayne@0 372 gi|9626243|ref|NC_001416.1| 372 A 26 ,,....,,...,.,.,,.,,..,,,. <4570B7C19D=>>55.3<62<GE:=
jpayne@0 373 gi|9626243|ref|NC_001416.1| 373 G 29 .......N,..,..,.,,.,,,.,.,,., G0/?0H?;0H48992EA=FG:G3=1FEGC
jpayne@0 374 gi|9626243|ref|NC_001416.1| 374 C 29 ,.,.....t,...,.,,,,,,.,..,,,^K, HE..CEC/7=EC3./GF/9/43H;.AHHB
jpayne@0 375 gi|9626243|ref|NC_001416.1| 375 T 28 ,..,.....,,..,.,.,..,,,,..,, 39.<6G>3:9A059:3H2FG9A54>66.
jpayne@0 376 gi|9626243|ref|NC_001416.1| 376 G 25 ,..,...,,.,.,.,,.,..,,.,, ?9C2D9C2?D/4E@.23H4D4:B74
jpayne@0 377 gi|9626243|ref|NC_001416.1| 377 C 27 .,.....,,,.,.,,,.,,.n,.,,,, >C=A>>D;1@7D;G/@313D<B2:23?
jpayne@0 378 gi|9626243|ref|NC_001416.1| 378 G 25 ,.....,..,.,,.,,,,...t.,, D2?/<@A91@0BC:@8FFDC2406/
jpayne@0 379 gi|9626243|ref|NC_001416.1| 379 C 27 .....,..,.,,.,.,,,,,.,,.,,^K, 6=5H?C779<?C<H51CEAGB4=DCCB
jpayne@0 380 gi|9626243|ref|NC_001416.1| 380 C 24 n...,,.,.,,..,,,.,...,,, A7AF=.:?@=HH=42GC3:=9@53
jpayne@0 381 gi|9626243|ref|NC_001416.1| 381 G 28 ,..,...,,.,,,,.,.,,,,.,,,,., =H?62.7H:3C83GG95193D18=@G@C
jpayne@0 382 gi|9626243|ref|NC_001416.1| 382 G 23 ,....,,.,,.,,.,,.,,,.,, 332/D./>G3;;0@>:2??GA=0
jpayne@0 383 gi|9626243|ref|NC_001416.1| 383 G 21 ,.,..N,,.,,.,..,..,,, >051;=@/89/AG?:96.?HE
jpayne@0 384 gi|9626243|ref|NC_001416.1| 384 A 26 .,....,...,.,,.,,.,,..,,,, .BBF@.@A5B/67:<61/?G>G5BF=
jpayne@0 385 gi|9626243|ref|NC_001416.1| 385 G 28 ,...,.,.,.,,.,.,.,.,,.,,.,,, //16=/HB4;;F9:>17B9D/H79G2C.
jpayne@0 386 gi|9626243|ref|NC_001416.1| 386 G 22 ,.........,.,,.,,,,,,^K, H9A3B4E9?0>8F/:.53/4/D
jpayne@0 387 gi|9626243|ref|NC_001416.1| 387 T 28 ,.,....,..,.n..,,.,.,.,.,,,, <3G:=?C36<9CD1>GH93.2D4EA9=9
jpayne@0 388 gi|9626243|ref|NC_001416.1| 388 T 31 ,..,...,..,N.,,.,.,,.,.,,,,.,,^K, BA;5A3EF3FA64>HD1FAG<0GH0.3509:
jpayne@0 389 gi|9626243|ref|NC_001416.1| 389 G 33 ,......,,N..,.,,.,,.,..,.,,.,,,,, /A020A4:2FA:.:>@H@.2/3D;C53.H=E<E
jpayne@0 390 gi|9626243|ref|NC_001416.1| 390 A 26 ,......,,..,.,,.,..,.,,,., 830>G>81385@><B<A5=93B5A.;
jpayne@0 391 gi|9626243|ref|NC_001416.1| 391 A 31 ,.,....,,,,.n,,.,,,,..,,.,,,.,, @8;@A@C0C11>>E/GCC5ED85@3DF8/.<
jpayne@0 392 gi|9626243|ref|NC_001416.1| 392 G 27 ..,...,,.,.,,,.,.,..,,,,,T, B0295BGD15DB1F?CE2CEDHE4B00
jpayne@0 393 gi|9626243|ref|NC_001416.1| 393 A 28 .,..,,..,,,..,,.,,.,,.,.,,,, 80>GEBG><2E4C@HC5;47.@1CF87>
jpayne@0 394 gi|9626243|ref|NC_001416.1| 394 A 23 .,....,,.,,.,$,.,.,..,,, .5DB>@B.:/?5;801<93=/B=
jpayne@0 395 gi|9626243|ref|NC_001416.1| 395 C 26 ,.,$....,.,,.,,.,,.,.,,.,,, 7?E>9HC3G=5C/2>;@.1185@D06
jpayne@0 396 gi|9626243|ref|NC_001416.1| 396 T 28 ,...,,..,,.,..,.,$,.,.,.,,.,. ;3:/H?711<7515@2;GA57=</B?@6
jpayne@0 397 gi|9626243|ref|NC_001416.1| 397 G 29 ,...C,..,..,,..,,.,,..,,,.,., @>E:D6=>08B78>A025<BD04@0/16C
jpayne@0 398 gi|9626243|ref|NC_001416.1| 398 C 28 ,....,.,,.,..,..,.,,.,,.,,., 061D>7?8.5D1E;4@H2/H8.<2=065
jpayne@0 399 gi|9626243|ref|NC_001416.1| 399 G 28 .....,..,.,.,,,...,,,.,,,,,. 70CD2596?.3<@C@<51<?4@0>.056
jpayne@0 400 gi|9626243|ref|NC_001416.1| 400 G 26 .....,.,.,,.,,,.,.,,,,,,.^K. />H0?4:;:9/;D5B2=07:H:@F66
jpayne@0 401 gi|9626243|ref|NC_001416.1| 401 C 27 ....,.,.,,..,,$.,.,.,.,,,.,, 911/<7BH;40D;4=10AG0<=1?3/=
jpayne@0 402 gi|9626243|ref|NC_001416.1| 402 A 25 ,......,.,.,..,.,..,,,.,. =/C;08=;@?7.5@?H01=971C9C
jpayne@0 403 gi|9626243|ref|NC_001416.1| 403 G 24 ,..,,.,,.,,.,..,.,.,,,.. G592@372;@/5>8?4.G4.;=/C
jpayne@0 404 gi|9626243|ref|NC_001416.1| 404 G 28 ,....,,..,.,,,..,.,.,,,,,... <2</5<B2303C//C=C.;6C75A1622
jpayne@0 405 gi|9626243|ref|NC_001416.1| 405 C 30 ,.....,,...g,..,.,.,,..,,.,,.. CE3E<2@<:DA3.<?.BH39B;99/733EF
jpayne@0 406 gi|9626243|ref|NC_001416.1| 406 C 28 ,...,,..,,,..,.,A.,,.,,,,,.^K. D;;0A5@=?0>5@B.D>4F997=3=285
jpayne@0 407 gi|9626243|ref|NC_001416.1| 407 A 29 ,...,...,,..,.,,.,,,,,.,,.,.. 4:9?/.3E/D86GD0995G?@7?2B3HA2
jpayne@0 408 gi|9626243|ref|NC_001416.1| 408 G 27 .....,..,.,$..,,.,,n,,.,..., ABF=DF=C=;9C@5BC196;58<@6=B
jpayne@0 409 gi|9626243|ref|NC_001416.1| 409 C 27 ...,,...n,,..,,.,,.,,,N,.., 6<;DGH920>C0D<296@/3:<2F288
jpayne@0 410 gi|9626243|ref|NC_001416.1| 410 G 30 ,.....,,...,,,...,,.,,,.,,..., B>H20@5C=AEGGDC=@68122;G19F5<8
jpayne@0 411 gi|9626243|ref|NC_001416.1| 411 A 23 ,....,,..,,,..,.,,,,.., H59@>80CD?>1=E6A6C71B9:
jpayne@0 412 gi|9626243|ref|NC_001416.1| 412 G 30 ,......,..,,..,..,,,.,,.,,.... 6A1?G:FDH6F>4>?9A4>/2/7>3;;CC=
jpayne@0 413 gi|9626243|ref|NC_001416.1| 413 G 24 ,....,..,.,,,.,.,.,,..., 2107:2;15?G;<76D0/;H@;BE
jpayne@0 414 gi|9626243|ref|NC_001416.1| 414 C 25 ,....,,..,.,.n.,,,,,,..., :<6G88EB;1/;74.984AD/C6=9
jpayne@0 415 gi|9626243|ref|NC_001416.1| 415 A 25 ,..,.,,,..,,.,,,,.,,.,.., E:CC8@E177;DEG7.?/@=>G@@8
jpayne@0 416 gi|9626243|ref|NC_001416.1| 416 G 27 c....,..N,,..,..,,.,.,,,,.. 8/8E79@1/B07.4001=0546;@A?5
jpayne@0 417 gi|9626243|ref|NC_001416.1| 417 A 24 ..$.,..,.,..,.,,.,,.,,,.. ?61>.4=3G7:C58<@6H@0=.A7
jpayne@0 418 gi|9626243|ref|NC_001416.1| 418 T 23 ,.....,,,,,,,.,,.,,.,.. 5/:@6<3/6.68@34F?.E179H
jpayne@0 419 gi|9626243|ref|NC_001416.1| 419 C 26 ,....,...,,....,,,.,,,,.,. ;2;?8?25/=2.9B?369.B<1C7@<
jpayne@0 420 gi|9626243|ref|NC_001416.1| 420 T 25 ,...,..,,,..,,,.,.,,.,... 9;5GB.:>93H>?35>8DG4<2H=D
jpayne@0 421 gi|9626243|ref|NC_001416.1| 421 C 27 ,..,,.,.,.,.,,.,,,.,,.,..., A:18=1:/A6</@8;3?D3.GA;1GH9
jpayne@0 422 gi|9626243|ref|NC_001416.1| 422 C 27 ,...,,..,,,,..,$,.,,,,.,,.., :B>@B?6C?C4>>E435=9CB6/0D4:
jpayne@0 423 gi|9626243|ref|NC_001416.1| 423 A 24 ,...,.,,..,.,,.,,.,,..,^K. 1CC8:?48/>D:339G:>74>9.E
jpayne@0 424 gi|9626243|ref|NC_001416.1| 424 G 25 ,...,..,,.,.,.,,,,$,,....^K. 0H96F?90GH18;>>H>E<:2DHC:
jpayne@0 425 gi|9626243|ref|NC_001416.1| 425 C 27 ,..,,..,,..,.,,.,,,.,.,..,. H0@@H?>59H2>B:5<.C=7CA7C2>@
jpayne@0 426 gi|9626243|ref|NC_001416.1| 426 C 23 ,....,,...,..,..,,,,... BDG@041.3FD.75=F./<.;E4
jpayne@0 427 gi|9626243|ref|NC_001416.1| 427 A 29 ,..,,...,,..,...,,.,,,.,..,.. C;30.B5/3@=;=.4G;A=8=3@F:4AD9
jpayne@0 428 gi|9626243|ref|NC_001416.1| 428 G 22 ,..,,..,..,,,,,...,..^K, /G0CDC7GBDF4/;45;.=F10
jpayne@0 429 gi|9626243|ref|NC_001416.1| 429 G 24 ,...,.,,.,...,.,,,.,.,.. E?6/@C<9@9<E43C:7237GCCB
jpayne@0 430 gi|9626243|ref|NC_001416.1| 430 A 29 ,..,,...,,..,.,.,,,..,...,..^K, G4=4?<F7:9.G:5:016?=/7BB282B?
jpayne@0 431 gi|9626243|ref|NC_001416.1| 431 A 15 ,,..,....,,,,., 3771==@=1/.=6?.
jpayne@0 432 gi|9626243|ref|NC_001416.1| 432 C 31 ,...,,..,..,..,g.,,,.,.,.,...,, 4?D058B6A543>014C8/B>G@BBF9/<3.
jpayne@0 433 gi|9626243|ref|NC_001416.1| 433 T 27 ,...,...,.,..,,,,,.,,..,.,, 1<331H@D66A1F1HB3B=@DC@A;.8
jpayne@0 434 gi|9626243|ref|NC_001416.1| 434 A 32 ,..,...,,..,...,,.,,,.,.,.,..,,^K. G.>;D899F>0AEFAB1A:..;3<2D1>@71E
jpayne@0 435 gi|9626243|ref|NC_001416.1| 435 T 28 ,..,,..,,...$.,,.,,,,...,.,,. ?G@25CDB7BC>491A<>/DF5HF5B8C
jpayne@0 436 gi|9626243|ref|NC_001416.1| 436 T 24 ..,.$..,,.n..,,..,,.,..,, ?G7>4=4D50/D4<@>5=3>DDG/
jpayne@0 437 gi|9626243|ref|NC_001416.1| 437 G 29 ....,,.,,.,.,.,,.,,...,..,..^K, .F4;A0:>H1/:C7/70A;2:.A0HB@/8
jpayne@0 438 gi|9626243|ref|NC_001416.1| 438 A 28 ,..,..,..,..,,.,,,,.......,. 0<A:D?>@771@==<7D448G/<F;2;1
jpayne@0 439 gi|9626243|ref|NC_001416.1| 439 G 29 ,...,..N.,..,,.,,..,.....,.., =2:=889@1D3G667/A859=HFHD8GA/
jpayne@0 440 gi|9626243|ref|NC_001416.1| 440 T 26 ,...,,.,.,...,,,.,.,....., 2:.82<:310D86?DE>49D@A9A:A
jpayne@0 441 gi|9626243|ref|NC_001416.1| 441 A 25 ....,,,..,,,.,,.,..,..,., G7CB@D11C<:>>>>9571.GH64G
jpayne@0 442 gi|9626243|ref|NC_001416.1| 442 C 20 ..,,..,..,.,T,....,. ;4?82.4;D0F3;=2=<229
jpayne@0 443 gi|9626243|ref|NC_001416.1| 443 G 29 ,...,,..,,.T,,,n.,.,....,,.., 9/H?C87GA;@0;0F?@;;C=6>.G097.
jpayne@0 444 gi|9626243|ref|NC_001416.1| 444 A 25 ...,.,..,..,,,.,..,..,,.. BE>/09F7DE<05A/DG.F>>0@.C
jpayne@0 445 gi|9626243|ref|NC_001416.1| 445 A 23 ,..,,,.,.,,,,,...,..,., G.6G0/CFCAB<3A4.;F@56HD
jpayne@0 446 gi|9626243|ref|NC_001416.1| 446 C 30 ,...,..,,.,n,,,,,.,...,..,,.., C@.6G:FA7<3.2:A4<H=6;C3B4;5>F8
jpayne@0 447 gi|9626243|ref|NC_001416.1| 447 G 25 ,....,,..,.,,,,.,...,N,,, <9F<3E0:/1<2GH./1/4HA;C3G
jpayne@0 448 gi|9626243|ref|NC_001416.1| 448 C 28 ,...,,.,,.,N.,,....,..,,..,, 3C<.C341D@=EA?A1;39A>A94B@20
jpayne@0 449 gi|9626243|ref|NC_001416.1| 449 C 27 ...,,..,.,..,,,,..,...,..,a =<3H14?064:E.<6D>;A4H<CH2>0
jpayne@0 450 gi|9626243|ref|NC_001416.1| 450 A 28 ,...,,..,,,,..,...,..,..,,^K.^K, BH7@;>G<@E@D3A3.H@5<0512A2E>
jpayne@0 451 gi|9626243|ref|NC_001416.1| 451 T 25 ,....,,..,,,.,,....,,.,.^K. ?7=CHC.86@9.7C4HFDF=>F>;D
jpayne@0 452 gi|9626243|ref|NC_001416.1| 452 C 30 ...,,.,,.,..,.,,,.,...,...,.,. 1EH7=C?C@336<DG1HF9450E;?FA6CF
jpayne@0 453 gi|9626243|ref|NC_001416.1| 453 G 33 ,...,,.,,..,.,,,.,....,.,,..,,.,. 80<:8D?A56A491>8EB7FE<9/34@EHF;0<
jpayne@0 454 gi|9626243|ref|NC_001416.1| 454 A 32 ,....,.,,..,..,,.,.,,..,...,,,., 86B?09CF.18AF;5EDD/G>;BCE>:DC79F
jpayne@0 455 gi|9626243|ref|NC_001416.1| 455 C 25 ..,..,...,.,,,,,.,..,.,.^K. >0=297;E:C@:6HGBF@/>@:2DC
jpayne@0 456 gi|9626243|ref|NC_001416.1| 456 T 27 ,..,..,.,..,.,,.,.,..,.,,.. 8@F18/@7<C87E5B71B07;6BA<4H
jpayne@0 457 gi|9626243|ref|NC_001416.1| 457 T 28 ..N,,....,..,,,,,,..,...,,.. 4A62?28:0G:@@2/7G8F2658>:.??
jpayne@0 458 gi|9626243|ref|NC_001416.1| 458 A 33 ,...,,.,,.,..,.,,,..,..,...,.,,., ;.4B<?8>@.@<6D6>39>F1;AA;CAA058GE
jpayne@0 459 gi|9626243|ref|NC_001416.1| 459 C 25 ...,,.,.,,.,,...,..,,.,.. A;2C;9AD1;H=/A2;5/>H17B=G
jpayne@0 460 gi|9626243|ref|NC_001416.1| 460 G 31 ,$....,,..,,.,.,,,.,,..,..,,.,,. B6EG415H.ED>1B1.7HB.40:D312<?2G
jpayne@0 461 gi|9626243|ref|NC_001416.1| 461 C 25 ....,,.,,..,.,,.,,...,.,. 5F.A>;:/GCDE53ECF>=A?;C83
jpayne@0 462 gi|9626243|ref|NC_001416.1| 462 G 27 ....,..,,.,.,,,.,...,,.,,.. 3A89FHB8>A9.@>.E:9CDD;969=9
jpayne@0 463 gi|9626243|ref|NC_001416.1| 463 T 26 .,,.,,.,.,.,.$.,....,,.,... HGG;79E/7BH1B?15323?2A=CHF
jpayne@0 464 gi|9626243|ref|NC_001416.1| 464 G 29 ...,...,.,,,,.,.,..,,..,,..,^K. 259G3FGA9:5H@0CB05/=DG.=1G.E@
jpayne@0 465 gi|9626243|ref|NC_001416.1| 465 C 28 ......,.,.,,.,,,,.n...A,.,.. B<FD;=/D.@.27.701:H5?76H6G1=
jpayne@0 466 gi|9626243|ref|NC_001416.1| 466 G 32 ..,,.,..,.,,,,,...,...,..,,...,. =42B;;3CD9=6:7.F9H0;@CBDF8/E6268
jpayne@0 467 gi|9626243|ref|NC_001416.1| 467 C 29 ...,,..,,..,.,,,,.,.,,..,,... ;;A=<?7557H<9E7C430<>2HB<<1@2
jpayne@0 468 gi|9626243|ref|NC_001416.1| 468 A 29 ...,N,,..,.,,,,,.,...,..,,... 0C3=H>0.<746H@:29<49A5G75CH/D
jpayne@0 469 gi|9626243|ref|NC_001416.1| 469 G 29 ..,..n,.$..,,$,,,....,..,.,..,. 52=<0D;<FAA9D0>//?GE;8=;4.?8B
jpayne@0 470 gi|9626243|ref|NC_001416.1| 470 G 27 ....,,,..,.,,,,.,...,,...,. 134:75A2CCC6=DF68<H76156D?5
jpayne@0 471 gi|9626243|ref|NC_001416.1| 471 C 31 ....,,..,.a,,.,...,,..,,.,..,.^K, 9.?1:7A@:=5?4=6005H?4::GCH1?H<B
jpayne@0 472 gi|9626243|ref|NC_001416.1| 472 C 28 ....,.,...,,.,..,.,,..,...,^K, EHG?C72F/C7A@?C809;;7G4B.;.B
jpayne@0 473 gi|9626243|ref|NC_001416.1| 473 G 23 ..,.,,,..,.,,..,,.,.,., 6B.>=0=AC;D;HB?=F7DCDAF
jpayne@0 474 gi|9626243|ref|NC_001416.1| 474 A 28 ..,,...,..,.,,.,...,..,.,.,. H:CBE9H=D78@=@G626/4<3=@0:D@
jpayne@0 475 gi|9626243|ref|NC_001416.1| 475 C 28 ...,,.,.,.,,..,.,,..,,,.,.,, @6F7@?<25?9E?5AC1CGG?5A9CD/8
jpayne@0 476 gi|9626243|ref|NC_001416.1| 476 G 27 ...,,..,,.,.,.,,.,N.,.,.,,, 7>H1/4@;B80.A2D9@BC/BE?A6.2
jpayne@0 477 gi|9626243|ref|NC_001416.1| 477 C 29 ....,,.,,.,.,,,..,..,..,.,.., C@??8./@<CE59;7A?F<92G1069<4C
jpayne@0 478 gi|9626243|ref|NC_001416.1| 478 A 28 .,..,,.,..,.,,...,.,,,,...,, /EG:867?47.@83GHCFE35.H>9G4.
jpayne@0 479 gi|9626243|ref|NC_001416.1| 479 C 28 .,..,.,..,,,,.n.,.,,.,,..,,, 6.6C=EECB@G3;38A9@@3>=.B517.
jpayne@0 480 gi|9626243|ref|NC_001416.1| 480 A 25 ..,.,,...,.,.,.,,..,,,.,, 45<31;65D@?E<0C>7<7E@1/8C
jpayne@0 481 gi|9626243|ref|NC_001416.1| 481 G 33 ....,,.,,.,.,.,,,.n.,.,.,,...,.,, E:85;D4H/>9137:D/@F:/.DECEFB.50FG
jpayne@0 482 gi|9626243|ref|NC_001416.1| 482 G 23 ..,.,.,.,...,...,...,,, G242?EB=F?96DE3@:B?60D2
jpayne@0 483 gi|9626243|ref|NC_001416.1| 483 A 27 ..,.,,...,,.,.,,..,,.,.,,,^K, DE6//.?;D3;;61=5:=7@6.G:0@B
jpayne@0 484 gi|9626243|ref|NC_001416.1| 484 A 34 ..,,..,.,.,.,,,.,....,,..,,.,.n,,, /46G><6/5@<GA85B6/1<>0D97?0.H3..56
jpayne@0 485 gi|9626243|ref|NC_001416.1| 485 C 27 ..,.,,.,.,$,,.,..,,.,.,.,.,, G35@>E/F3:GC<95FB36D55E07EE
jpayne@0 486 gi|9626243|ref|NC_001416.1| 486 T 27 ..,,..,..,,,..,.,..,,,...,, 51?G<C61><C0F><A<63H6.63<<E
jpayne@0 487 gi|9626243|ref|NC_001416.1| 487 G 31 ....,,..,n.,.,.,,..,,..,.,...,, @.D9>>D8?H7.?=::?G<94=;AHG08D=<
jpayne@0 488 gi|9626243|ref|NC_001416.1| 488 A 30 ....,.,,,..,,,..,.,,..,,..,.,, 4A?@B6F>.8AD/:2?2A4E21>:>@.H1.
jpayne@0 489 gi|9626243|ref|NC_001416.1| 489 A 29 ..,.,.,..,.,,.,.,,$..,$,...,.,, /B.@FE13::=.98D3B2847F7H60F8C
jpayne@0 490 gi|9626243|ref|NC_001416.1| 490 G 23 ......,.,,.,,.,.,..,,., <18D7?;3=?671.9C85FC;03
jpayne@0 491 gi|9626243|ref|NC_001416.1| 491 A 23 ....,.,.,,.$,..,.,.,.,,^K. D/7:?/0H>G>GC5@B962A?C6
jpayne@0 492 gi|9626243|ref|NC_001416.1| 492 A 28 ...,,..,.,..,,,..,.,,.,.,,.. F7B7?..@/HG8F/<GA>5=E@8<18=>
jpayne@0 493 gi|9626243|ref|NC_001416.1| 493 T 27 ..,,.,.,.,.,,...,.,.,.,,,.. >.97?7H.HGC4A>E5G1>EG:GBG0C
jpayne@0 494 gi|9626243|ref|NC_001416.1| 494 G 28 ....,,.,,...,,,.,..,....,,,. ?8G5<1>BC.H3A<DF.AG31801FE2>
jpayne@0 495 gi|9626243|ref|NC_001416.1| 495 C 21 ..,,..$,.,,n....,$.,... @.C<.72G>D49GE1>>0;;/
jpayne@0 496 gi|9626243|ref|NC_001416.1| 496 C 24 ...,t.,,,,,,,......,.,,. 8B160D8<:HG.6ABB.F><C1F2
jpayne@0 497 gi|9626243|ref|NC_001416.1| 497 A 25 ....,,.,,,.,,,,.......,.. =442:D0BB8;E1A:;6>E9.=?.>
jpayne@0 498 gi|9626243|ref|NC_001416.1| 498 G 22 ...,,...,...,.,.,,..,^K. <3CGA23:27FBF>5G:<6<HE
jpayne@0 499 gi|9626243|ref|NC_001416.1| 499 A 25 ..N.,.,.,..,......,.,,.,. ::;G6E@1=0@=B0@1?A>5EE0?6
jpayne@0 500 gi|9626243|ref|NC_001416.1| 500 G 27 .,.,.,.$.,.,,.........,,..,. E>EAB8437.F6.50E6=E=A298F78
jpayne@0 501 gi|9626243|ref|NC_001416.1| 501 A 27 ...,.,.,.,,....$.,.,.,,,..,. @9/9B41?E/G8DA5/258D;81G<C=
jpayne@0 502 gi|9626243|ref|NC_001416.1| 502 C 28 ....,,.,.,,,.....,..,,...,., 790D:E671B;6;0.90>8H28>59?0G
jpayne@0 503 gi|9626243|ref|NC_001416.1| 503 T 26 ....,,,.,..,,...,...,,,.,. @3F2@;H>1B6B@451AHF9C9909<
jpayne@0 504 gi|9626243|ref|NC_001416.1| 504 C 26 ...,.,,..,,,.....,,,,,..., ;47?H1@23496;FC1H3<247D12?
jpayne@0 505 gi|9626243|ref|NC_001416.1| 505 C 29 ....,.,.,.,.,,,....,.,,,..,., .9?/D6E=9;:AG>??=D?968?25=8G2
jpayne@0 506 gi|9626243|ref|NC_001416.1| 506 G 24 ...,,,..,,.......,.,,.., /EF;HB95=6AEE7<31451G2AE
jpayne@0 507 gi|9626243|ref|NC_001416.1| 507 C 25 ..,,,..,.,,,......,..gn.. E?22:;F/;1;5G24=H68=7@5>;
jpayne@0 508 gi|9626243|ref|NC_001416.1| 508 T 29 ....,,,,,$.,.,,,....,$.,.,..,,, =;;939>/;B7E59=B78;6@F30C8>08
jpayne@0 509 gi|9626243|ref|NC_001416.1| 509 G 26 ....,,,..,,..$....,,,,..,,, GE?904B?:3H>6E5/AH>.F==>E/
jpayne@0 510 gi|9626243|ref|NC_001416.1| 510 A 20 .,,.,.,,,....,,,.,,^K. C..6;B04CDF1E;C<?0<@
jpayne@0 511 gi|9626243|ref|NC_001416.1| 511 A 19 ...,,..,,,....,.,., E4@:=H3C>>7;H.435>/
jpayne@0 512 gi|9626243|ref|NC_001416.1| 512 G 27 .,,,,$..,.,,......,.,a..,.,. 9:.E?AB0D30F:1@C9=B8E::;483
jpayne@0 513 gi|9626243|ref|NC_001416.1| 513 T 23 ..,,.,.,,.....,,.,.,,^K.^K. 4@G<<>/50G5<CGBA:G0365B
jpayne@0 514 gi|9626243|ref|NC_001416.1| 514 G 28 ..,,,..,,,...,.,,,...,.,,... 9>63E02G:59G<F5F;AAA/5AD7G=9
jpayne@0 515 gi|9626243|ref|NC_001416.1| 515 G 25 ...,,,..,,.......,,..,.., 8C?C>71<:6/8B887C6=9CB3;4
jpayne@0 516 gi|9626243|ref|NC_001416.1| 516 T 25 ..,..,.....,.,,,..,,,..., DG19>H;18:BBD45/399GE:G.8
jpayne@0 517 gi|9626243|ref|NC_001416.1| 517 G 24 ..,,.,,......,.,,,...,,, @EFD>7C9.=9;2E5=.H.4?8GA
jpayne@0 518 gi|9626243|ref|NC_001416.1| 518 G 25 .,,,.,.,,,...$..,,..,.,... 47@B3C>/;4?.AB?7CF/>.8?19
jpayne@0 519 gi|9626243|ref|NC_001416.1| 519 A 22 ..,,.,.,,....,...,.,., 5=:?E;E38CDB==53E4AF3.
jpayne@0 520 gi|9626243|ref|NC_001416.1| 520 A 25 ...,.,,.....,,,...,.,,... H6C:=CE.GF.797H@@25:@77C4
jpayne@0 521 gi|9626243|ref|NC_001416.1| 521 A 27 ...,,,.,,,,....,.,,,...,.,. D99=8<:1;D@;A0G<:B>77:3B87.
jpayne@0 522 gi|9626243|ref|NC_001416.1| 522 C 22 ...,,.T.,..,.,,..,,.., :@21FAB58.2ACAB3/.?6F:
jpayne@0 523 gi|9626243|ref|NC_001416.1| 523 C 20 .,.,,,..$...,,...,.,. G37FB@>1C.42/BD=@?57
jpayne@0 524 gi|9626243|ref|NC_001416.1| 524 G 16 ....,...,,..,.., 636@8A<?.BB54E6C
jpayne@0 525 gi|9626243|ref|NC_001416.1| 525 C 25 ...,$,.,.,...,.,..,.,,..., .F>C;C68;6G9FCD/E.CF3;<.0
jpayne@0 526 gi|9626243|ref|NC_001416.1| 526 A 23 ...,.,,,.N..,,,..,,..., <=G7;>@/8C46732F<5@F..>
jpayne@0 527 gi|9626243|ref|NC_001416.1| 527 T 19 ...,..,,,,,,,...,.. D?8E>7:DG1:.C3=B0A0
jpayne@0 528 gi|9626243|ref|NC_001416.1| 528 T 21 N.,..,,....n,,..,,... 62@3?=:@0FG5:44AF9:>2
jpayne@0 529 gi|9626243|ref|NC_001416.1| 529 C 20 ..,..,.,,....,..,G., :83;24G:1B8C<E:FFC86
jpayne@0 530 gi|9626243|ref|NC_001416.1| 530 T 23 ..,.....,.,,,..,.,..A,^K, <ECB?.C<0:13<BDA6=9F54@
jpayne@0 531 gi|9626243|ref|NC_001416.1| 531 G 22 ...,,,....,.,,,...,.,, 672HD;3E:6B7D4/86?5A0:
jpayne@0 532 gi|9626243|ref|NC_001416.1| 532 T 20 .,..,...$...,,..,..,, FF6/GA<51>4H.AC/H<<2
jpayne@0 533 gi|9626243|ref|NC_001416.1| 533 A 26 ....,..,.,,...,,,....,,.,^K, 2<6H=EH5.CD?;5H?;?>9AH9H71
jpayne@0 534 gi|9626243|ref|NC_001416.1| 534 C 20 ....,..,,,.,,,.,..,, D1F=40/<D;1/F1C1351E
jpayne@0 535 gi|9626243|ref|NC_001416.1| 535 T 20 ......,.,.,...,,.,,, ?C/62<BE9137==CE77EE
jpayne@0 536 gi|9626243|ref|NC_001416.1| 536 T 20 .....$,.,,.,,..,...,, FHF8;5FBFB870:9:;489
jpayne@0 537 gi|9626243|ref|NC_001416.1| 537 T 21 ...,,...,.,,,..,,.,,^K, 96H621CD6D5B1>7<E8.5?
jpayne@0 538 gi|9626243|ref|NC_001416.1| 538 C 27 ....,..,,,...,,...,,...,,,, 00F07928FH0AHA2887CG5<<4<E3
jpayne@0 539 gi|9626243|ref|NC_001416.1| 539 G 19 ,..,..,,,.,.,,.,,,, CA:>;2B/G1<1@<C63/B
jpayne@0 540 gi|9626243|ref|NC_001416.1| 540 T 23 ...,.,,,..,,..,,...,,,, 13@/8EC.B0B9BAF93H7666.
jpayne@0 541 gi|9626243|ref|NC_001416.1| 541 G 25 ..,,,,..,.,,...$,.,,...,,, /?78G;@254:AE;>H902.@C39.
jpayne@0 542 gi|9626243|ref|NC_001416.1| 542 C 25 ...,,.,,,...,,,,.,.,..,,, >;57DE??98=88G68=7D;;/<=0
jpayne@0 543 gi|9626243|ref|NC_001416.1| 543 T 19 ...,.,,,,..,,.,,.,^K, 6E4D8/944?276>2.C:4
jpayne@0 544 gi|9626243|ref|NC_001416.1| 544 G 22 ....,.,,...,$,......,,, @4A2>731GF=1<:0;B.G@2<
jpayne@0 545 gi|9626243|ref|NC_001416.1| 545 T 21 ...,,,...,..,.,..,,,, 5/@16274>88@?<7B9?E2C
jpayne@0 546 gi|9626243|ref|NC_001416.1| 546 C 21 ...,.,,...,,.,.,,..,, ;@?GE:4;9254542C<G4F=
jpayne@0 547 gi|9626243|ref|NC_001416.1| 547 G 24 ...,..,,,...,.,$..,,.,,,, CG1<2?BGBB:8D9:2;DD50<G:
jpayne@0 548 gi|9626243|ref|NC_001416.1| 548 C 21 ..,.,.,,,.,.,...,,,,, .=/8=/2469.1@@>AA=<8:
jpayne@0 549 gi|9626243|ref|NC_001416.1| 549 G 23 ...,,,,...,...,...,,,,, 6<=508A<>4=9GFE=E5F3869
jpayne@0 550 gi|9626243|ref|NC_001416.1| 550 G 26 ...,$.,.,..,...,,...,,,,,,^K. :716H5H4017HG@:5><69>1=.@/
jpayne@0 551 gi|9626243|ref|NC_001416.1| 551 A 23 ....,,,,...,,,,...,,,,^K. =AEG>99?/FE.6:=@;C:?CF3
jpayne@0 552 gi|9626243|ref|NC_001416.1| 552 T 25 .....,.,,,..,.,.,,...,,,, 8@0?3AH7GE;D20@6E76:=E@A;
jpayne@0 553 gi|9626243|ref|NC_001416.1| 553 C 20 ....,,,..,,.....,,,. ;=:72F1D7:=GF4CBG4G1
jpayne@0 554 gi|9626243|ref|NC_001416.1| 554 G 24 ....,,...,.,...,,,,,,..^K, 0:C0HHDB1B?D<375A0;GA<>A
jpayne@0 555 gi|9626243|ref|NC_001416.1| 555 C 27 ...,.,,...,.,.,.n,..n,,,.,^K, 4C67A?65:22GG6;H8>0@C;G<A<2
jpayne@0 556 gi|9626243|ref|NC_001416.1| 556 A 24 ...,.,,,..,,..,,,.,,..,, @?;A2F=7.F13//4;04@9B:67
jpayne@0 557 gi|9626243|ref|NC_001416.1| 557 G 21 ....,,,,.....,..,,,,^K, 21?@B;B56H.==9:=93DH7
jpayne@0 558 gi|9626243|ref|NC_001416.1| 558 G 27 ....,.,,..,.,..,,...,,,,.,, 53A734/.34H33E>4H:1F2F;:0><
jpayne@0 559 gi|9626243|ref|NC_001416.1| 559 T 25 ...,,....,.,,,...,,,,.,,, 37B>6BD13:33631<=?HB128D/
jpayne@0 560 gi|9626243|ref|NC_001416.1| 560 G 27 .....,...,,..,,,..,,,,,..,, 05?E/H@=?F1A9?HFD@=776;41<0
jpayne@0 561 gi|9626243|ref|NC_001416.1| 561 A 24 .....,.,,,.,..,,.,,,.,,, :;C70>52.5.2=9706.0E7@3H
jpayne@0 562 gi|9626243|ref|NC_001416.1| 562 A 16 ...,..$.,,..,,.,^K, =35D8.E5<HE7FA/6
jpayne@0 563 gi|9626243|ref|NC_001416.1| 563 A 25 .....,.,,..,.,...,,,,..,, ?9FD@799C1=9FA</>84/=>7C:
jpayne@0 564 gi|9626243|ref|NC_001416.1| 564 T 19 .....,.,,,..,,,,,., 2=18B>05>B@><:364D@
jpayne@0 565 gi|9626243|ref|NC_001416.1| 565 T 24 .....,.,..,.,...,,,,,,,, =2GH>/BDA3H2E5E7<DA=>?0?
jpayne@0 566 gi|9626243|ref|NC_001416.1| 566 G 22 ......,,,,$.,,..,,,,,,, F;=6A@.66E6;9=8;8H7//<
jpayne@0 567 gi|9626243|ref|NC_001416.1| 567 C 16 .....,..,,..,,,, 6//</5:H/B?1HD3D
jpayne@0 568 gi|9626243|ref|NC_001416.1| 568 C 26 ......,,..,..,,..,,,,,..,^K, F<6BH<D1<@>E3182:D27A@;G9A
jpayne@0 569 gi|9626243|ref|NC_001416.1| 569 A 20 .....,,,....,,,.,,,^K, />A.3.;<3E?.91C8;64.
jpayne@0 570 gi|9626243|ref|NC_001416.1| 570 G 17 .....,A$,...,,,,,, 6081.@/D.2/CF9CH;
jpayne@0 571 gi|9626243|ref|NC_001416.1| 571 T 22 ....,,....,,,,,,..,,,^K, 4:>379>H7CG299<G3@G:02
jpayne@0 572 gi|9626243|ref|NC_001416.1| 572 A 20 ...,,.,.,..,,,.,,,,, DE7.@8F5;F;@>G0AB//?
jpayne@0 573 gi|9626243|ref|NC_001416.1| 573 T 17 ..,..,..,,,,.,,,, FAA.9;H0F0;H;/D10
jpayne@0 574 gi|9626243|ref|NC_001416.1| 574 T 22 ....,,,,.,..,,,a.,,,.^K, 570E;;:8>E4?4<;:1=BHC6