Mercurial > repos > jpayne > snp_pipeline

comparison 6_merge_vcfs.xml @ 52:0acc1975bbeb

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"planemo upload"
author jpayne
date Thu, 05 Nov 2020 15:21:19 -0500
parents 568eb62c7524
children 40405b16de1d
comparison
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51:568eb62c7524 52:0acc1975bbeb
14 #for $vcf in $vcfs 14 #for $vcf in $vcfs
15 -n $vcf.element_identifier -f $vcf 15 -n $vcf.element_identifier -f $vcf
16 #end for 16 #end for
17 > ./file 17 > ./file
18 && cat ./file 18 && cat ./file
19 && cat ./logs*/*log 1>&2
19 && cfsan_snp_pipeline merge_vcfs ./file 20 && cfsan_snp_pipeline merge_vcfs ./file
20 ]]></command> 21 ]]></command>
21 <inputs> 22 <inputs>
22 <param type="data_collection" format="vcf" collection_type="list" name="vcfs" label="List of VCFs" /> 23 <param type="data_collection" format="vcf" collection_type="list" name="vcfs" label="List of VCFs" />
23 </inputs> 24 </inputs>