Mercurial > repos > jpayne > snp_pipeline
comparison 4_merge_sites.xml @ 61:2af5e948dd5c
planemo upload
author | jpayne |
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date | Wed, 26 Jun 2024 00:58:54 -0400 (5 months ago) |
parents | 49d672730d3e |
children | d497922d6caa |
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60:0b0e3e4376a7 | 61:2af5e948dd5c |
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1 <tool id="merge_sites" name="4. Merge Sites" version="1.0.1" profile="16.10"> | 1 <tool id="merge_sites" name="4. Merge Sites" version="1.0.1" profile="16.10"> |
2 <description>from multiple samples</description> | 2 <description>from multiple samples</description> |
3 <requirements> | 3 <requirements> |
4 <container type="docker">quay.io/biocontainers/mulled-v2-a9689be5d4f7dc232fcd76f2f32bef2b80afcb49:0560aee94873e022862623c7766c9634a09b9513-0</container> | 4 <!-- <container type="docker">quay.io/biocontainers/mulled-v2-a9689be5d4f7dc232fcd76f2f32bef2b80afcb49:0560aee94873e022862623c7766c9634a09b9513-0</container> --> |
5 <!-- <requirement type="package" version="2.4.5">bowtie2</requirement> | 5 <requirement type="package" version="2.4.5">bowtie2</requirement> |
6 <requirement type="package" version="1.9">samtools</requirement> | 6 <requirement type="package" version="1.9">samtools</requirement> |
7 <requirement type="package" version="1.0.8">bzip2</requirement> | 7 <requirement type="package" version="1.0.8">bzip2</requirement> |
8 <requirement type="package" version="2.2.1">snp-pipeline</requirement> --> | 8 <requirement type="package" version="2.2.1">snp-pipeline</requirement> |
9 <!-- <requirement type="package" version="3.6.8">python</requirement> --> | 9 <!-- <requirement type="package" version="3.6.8">python</requirement> --> |
10 </requirements> | 10 </requirements> |
11 <command detect_errors="exit_code"><![CDATA[ | 11 <command detect_errors="exit_code"><![CDATA[ |
12 export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && | 12 export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && |
13 python $__tool_directory__/snp-wind.py ./ | 13 python $__tool_directory__/snp-wind.py ./ |