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comparison 7_smp_matrix.xml @ 15:453131d6440f

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Wed, 31 Jan 2018 10:10:14 -0500
parents f81c993e6e31
children e3a4351809ce
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14:f81c993e6e31 15:453131d6440f
6 <requirement type="package" version="1.0.1">snp-pipeline</requirement> 6 <requirement type="package" version="1.0.1">snp-pipeline</requirement>
7 <requirement type="package">tabix</requirement> 7 <requirement type="package">tabix</requirement>
8 <requirement type="package" version="3.4">python3</requirement> 8 <requirement type="package" version="3.4">python3</requirement>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 unset LD_LIBRARY_PATH &&
11 python $__tool_directory__/snp-wind.py ./ -p "consensus.fasta" 12 python $__tool_directory__/snp-wind.py ./ -p "consensus.fasta"
12 #for $fa in sorted($cons, key=lambda f: f.element_identifier) 13 #for $fa in sorted($cons, key=lambda f: f.element_identifier)
13 -n $fa.element_identifier -f $fa 14 -n $fa.element_identifier -f $fa
14 #end for 15 #end for
15 > ./file && 16 > ./file &&