Mercurial > repos > jpayne > snp_pipeline

comparison 6_merge_vcfs.xml @ 21:46b274d082a9

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Wed, 31 Jan 2018 12:50:31 -0500
parents baf9ccfae6f0
children 54255ae587ec
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20:baf9ccfae6f0 21:46b274d082a9
8 <requirement type="package" version="3.4">python3</requirement> 8 <requirement type="package" version="3.4">python3</requirement>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 env && 11 env &&
12 which bcftools && 12 which bcftools &&
13 which bunzip &&
14 which snp-pipeline && 13 which snp-pipeline &&
15 which python && 14 which python &&
16 ldconfig -p | grep "libbz2.so*" && 15 ldconfig -p | grep "libbz2.so*" &&
17 python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf" 16 python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
18 #for $vcf in $vcfs 17 #for $vcf in $vcfs