Mercurial > repos > jpayne > snp_pipeline

comparison 2_call_sites.xml @ 6:62191abf5426

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planemo upload commit b'7f6183b769772449fbcee903686b8d5ec5b7439f\n'-dirty
author jpayne
date Mon, 29 Jan 2018 13:56:19 -0500
parents 5191246bc2e2
children 13539c458a6e
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5:5191246bc2e2 6:62191abf5426
5 <requirement type="package" version="1.6">samtools</requirement> 5 <requirement type="package" version="1.6">samtools</requirement>
6 <requirement type="package" version="1.0.6">bzip2</requirement> 6 <requirement type="package" version="1.0.6">bzip2</requirement>
7 <requirement type="package">picard</requirement> 7 <requirement type="package">picard</requirement>
8 <requirement type="package">varscan</requirement> 8 <requirement type="package">varscan</requirement>
9 <requirement type="package" version="1.5.11">boto3</requirement> 9 <requirement type="package" version="1.5.11">boto3</requirement>
10 <requirement type="package">package_python_3_5</requirement>
10 </requirements> 11 </requirements>
11 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
12 $__tool_directory__/snp-cache.py snp_sitecalls 13 $__tool_directory__/snp-cache.py snp_sitecalls
13 "\$(md5sum $input $sample | cut -c -32 | md5sum | cut -c -32)" 14 "\$(md5sum $input $sample | cut -c -32 | md5sum | cut -c -32)"
14 -c " 15 -c "