Mercurial > repos > jpayne > snp_pipeline

comparison 6_merge_vcfs.xml @ 6:62191abf5426

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planemo upload commit b'7f6183b769772449fbcee903686b8d5ec5b7439f\n'-dirty
author jpayne
date Mon, 29 Jan 2018 13:56:19 -0500
parents eefdd97a6749
children 13539c458a6e
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5:5191246bc2e2 6:62191abf5426
2 <description>into a multi-sample VCF with consensus SNPs</description> 2 <description>into a multi-sample VCF with consensus SNPs</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.3.1">bcftools</requirement> 4 <requirement type="package" version="1.3.1">bcftools</requirement>
5 <requirement type="package" version="1.0.1">snp-pipeline</requirement> 5 <requirement type="package" version="1.0.1">snp-pipeline</requirement>
6 <requirement type="package">tabix</requirement> 6 <requirement type="package">tabix</requirement>
7 <requirement type="package">package_python_3_5</requirement>
7 </requirements> 8 </requirements>
8 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
9 $__tool_directory__/snp-wind.py ./ -p "consensus.vcf" 10 $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
10 #for $vcf in $vcfs 11 #for $vcf in $vcfs
11 -n $vcf.element_identifier -f $vcf 12 -n $vcf.element_identifier -f $vcf