Mercurial > repos > jpayne > snp_pipeline

comparison 1_map_reads.xml @ 34:87f53c4a13df

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Thu, 01 Feb 2018 19:01:35 -0500
parents 8764af78e270
children 69216317baa7
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33:b6bc9158666c 34:87f53c4a13df
2 <description>to index, or lookup cached alignment</description> 2 <description>to index, or lookup cached alignment</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.0.6">bzip2</requirement> 4 <requirement type="package" version="1.0.6">bzip2</requirement>
5 <requirement type="package" version="2.3.4">bowtie2</requirement> 5 <requirement type="package" version="2.3.4">bowtie2</requirement>
6 <requirement type="package" version="1.5.11">boto3</requirement> 6 <requirement type="package" version="1.5.11">boto3</requirement>
7 <requirement type="package" version="3.4">python3</requirement> 7 <requirement type="package" version="3.5">python</requirement>
8 </requirements> 8 </requirements>
9 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
10 #if $reads.reads_select == 'collection' 10 #if $reads.reads_select == 'collection'
11 export files="$reads.coll.forward $reads.coll.reverse" && 11 export files="$reads.coll.forward $reads.coll.reverse" &&
12 export params="-1 $reads.coll.forward -2 $reads.coll.reverse" && 12 export params="-1 $reads.coll.forward -2 $reads.coll.reverse" &&