Mercurial > repos > jpayne > snp_pipeline

comparison 2_call_sites.xml @ 34:87f53c4a13df

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Thu, 01 Feb 2018 19:01:35 -0500
parents 25b858c2f21d
children 69216317baa7
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33:b6bc9158666c 34:87f53c4a13df
5 <requirement type="package" version="1.6">samtools</requirement> 5 <requirement type="package" version="1.6">samtools</requirement>
6 <requirement type="package" version="1.0.6">bzip2</requirement> 6 <requirement type="package" version="1.0.6">bzip2</requirement>
7 <requirement type="package">picard</requirement> 7 <requirement type="package">picard</requirement>
8 <requirement type="package">varscan</requirement> 8 <requirement type="package">varscan</requirement>
9 <requirement type="package" version="1.5.11">boto3</requirement> 9 <requirement type="package" version="1.5.11">boto3</requirement>
10 <requirement type="package" version="3.4">python3</requirement> 10 <requirement type="package" version="3.5">python</requirement>
11 </requirements> 11 </requirements>
12 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
13 python $__tool_directory__/snp-cache.py snp_sitecalls 13 python $__tool_directory__/snp-cache.py snp_sitecalls
14 "\$(md5sum $input $sample | cut -c -32 | md5sum | cut -c -32)" 14 "\$(md5sum $input $sample | cut -c -32 | md5sum | cut -c -32)"
15 -c " 15 -c "