Mercurial > repos > jpayne > snp_pipeline

comparison 7_smp_matrix.xml @ 34:87f53c4a13df

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Thu, 01 Feb 2018 19:01:35 -0500
parents 4bb7e4a360bc
children e6ec3c848b32
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33:b6bc9158666c 34:87f53c4a13df
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.6">bcftools</requirement> 4 <requirement type="package" version="1.6">bcftools</requirement>
5 <requirement type="package" version="1.0.6">bzip2</requirement> 5 <requirement type="package" version="1.0.6">bzip2</requirement>
6 <requirement type="package" version="1.0.1">snp-pipeline</requirement> 6 <requirement type="package" version="1.0.1">snp-pipeline</requirement>
7 <requirement type="package">tabix</requirement> 7 <requirement type="package">tabix</requirement>
8 <requirement type="package" version="3.4">python3</requirement> 8 <requirement type="package" version="3.5">python</requirement>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 python $__tool_directory__/snp-wind.py ./ -p "consensus.fasta" 11 python $__tool_directory__/snp-wind.py ./ -p "consensus.fasta"
12 #for $fa in sorted($cons, key=lambda f: f.element_identifier) 12 #for $fa in sorted($cons, key=lambda f: f.element_identifier)
13 -n $fa.element_identifier -f $fa 13 -n $fa.element_identifier -f $fa