Mercurial > repos > jpayne > snp_pipeline

comparison 6_merge_vcfs.xml @ 57:d3095ad12f24

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload"
author jpayne
date Fri, 06 Nov 2020 12:50:48 -0500
parents 43d9920efbe1
children d53281e6edae
comparison
equal deleted inserted replaced
56:43d9920efbe1 57:d3095ad12f24
13 python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf" 13 python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
14 #for $vcf in $vcfs 14 #for $vcf in $vcfs
15 -n $vcf.element_identifier -f $vcf 15 -n $vcf.element_identifier -f $vcf
16 #end for 16 #end for
17 > ./file 17 > ./file
18 # need a comment here
19 && cat ./file 18 && cat ./file
20 && cfsan_snp_pipeline merge_vcfs ./file 19 && cfsan_snp_pipeline merge_vcfs ./file
21 ]]></command> 20 ]]></command>
22 <inputs> 21 <inputs>
23 <param type="data_collection" format="vcf" collection_type="list" name="vcfs" label="List of VCFs" /> 22 <param type="data_collection" format="vcf" collection_type="list" name="vcfs" label="List of VCFs" />