Mercurial > repos > jpayne > snp_pipeline

comparison 6_merge_vcfs.xml @ 62:d497922d6caa

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planemo upload
author jpayne
date Fri, 28 Jun 2024 00:26:24 -0400
parents 2af5e948dd5c
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61:2af5e948dd5c 62:d497922d6caa
1 <tool id="merge_vcfs" name="6. Merge VCFs" version="1.0.1" profile="16.10"> 1 <tool id="merge_vcfs" name="6. Merge VCFs" version="1.0.1" profile="16.10">
2 <description>into a multi-sample VCF with consensus SNPs</description> 2 <description>into a multi-sample VCF with consensus SNPs</description>
3 <requirements> 3 <requirements>
4 <!-- <container type="docker">quay.io/biocontainers/mulled-v2-72d480da2f80e0804df2fc75273988c6dba1648d:f354c444b518b0ada8e031aa2984346e2f5d8837-0</container> --> 4 <container type="docker">quay.io/staphb/cfsan-snp-pipeline</container>
5 <requirement type="package" version="1.9">bcftools</requirement> 5 <requirement type="package" version="1.9">bcftools</requirement>
6 <requirement type="package" version="1.0.8">bzip2</requirement> 6 <requirement type="package" version="1.0.8">bzip2</requirement>
7 <requirement type="package" version="2.2.1">snp-pipeline</requirement> 7 <requirement type="package" version="2.2.1">snp-pipeline</requirement>
8 <requirement type="package" version="0.2.6">tabix</requirement> 8 <requirement type="package" version="0.2.6">tabix</requirement>
9 <requirement type="package" version="1.9">htslib</requirement> 9 <requirement type="package" version="1.9">htslib</requirement>