Mercurial > repos > jpayne > snp_pipeline
comparison CFSAN_SNP_Pipeline.ga @ 0:eefdd97a6749
planemo upload commit b'7f6183b769772449fbcee903686b8d5ec5b7439f\n'-dirty
author | jpayne |
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date | Wed, 24 Jan 2018 14:18:21 -0500 |
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-1:000000000000 | 0:eefdd97a6749 |
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1 { | |
2 "a_galaxy_workflow": "true", | |
3 "annotation": "", | |
4 "format-version": "0.1", | |
5 "name": "CFSAN SNP Pipeline", | |
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663 { | |
664 "name": "pairws", | |
665 "type": "tsv" | |
666 }, | |
667 { | |
668 "name": "distma", | |
669 "type": "tsv" | |
670 }, | |
671 { | |
672 "name": "referenceSNP", | |
673 "type": "fasta" | |
674 }, | |
675 { | |
676 "name": "metrics", | |
677 "type": "tsv" | |
678 } | |
679 ], | |
680 "position": { | |
681 "left": 2050, | |
682 "top": 349 | |
683 }, | |
684 "post_job_actions": { | |
685 "HideDatasetActionmetrics": { | |
686 "action_arguments": {}, | |
687 "action_type": "HideDatasetAction", | |
688 "output_name": "metrics" | |
689 }, | |
690 "TagDatasetActiondistma": { | |
691 "action_arguments": { | |
692 "tags": "filtered" | |
693 }, | |
694 "action_type": "TagDatasetAction", | |
695 "output_name": "distma" | |
696 }, | |
697 "TagDatasetActionpairws": { | |
698 "action_arguments": { | |
699 "tags": "filtered" | |
700 }, | |
701 "action_type": "TagDatasetAction", | |
702 "output_name": "pairws" | |
703 }, | |
704 "TagDatasetActionreferenceSNP": { | |
705 "action_arguments": { | |
706 "tags": "filtered" | |
707 }, | |
708 "action_type": "TagDatasetAction", | |
709 "output_name": "referenceSNP" | |
710 }, | |
711 "TagDatasetActionsnpma": { | |
712 "action_arguments": { | |
713 "tags": "filtered" | |
714 }, | |
715 "action_type": "TagDatasetAction", | |
716 "output_name": "snpma" | |
717 } | |
718 }, | |
719 "tool_id": "snp_matrix", | |
720 "tool_state": "{\"__page__\": null, \"snplist\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"cons\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"reference\": \"{\\\"ref\\\": \\\"history\\\", \\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1}\"}", | |
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722 "type": "tool", | |
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724 "workflow_outputs": [ | |
725 { | |
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727 "output_name": "distma", | |
728 "uuid": "0b3437f6-5370-415c-bd02-f85fd4527783" | |
729 }, | |
730 { | |
731 "label": "Filtered SNP reference (FASTA)", | |
732 "output_name": "referenceSNP", | |
733 "uuid": "bca4048e-2af1-4764-a1de-cf987914fc2a" | |
734 }, | |
735 { | |
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737 "output_name": "snpma", | |
738 "uuid": "2ca775f1-917f-4824-b11a-1506c2e75bc6" | |
739 }, | |
740 { | |
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743 "uuid": "6d385865-e585-4bc1-956f-95110edf6095" | |
744 } | |
745 ] | |
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750 } |