Mercurial > repos > jpayne > snp_pipeline

comparison 4_merge_sites.xml @ 48:fc7a28de6aa0

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planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty
author jpayne
date Wed, 08 May 2019 11:10:14 -0400
parents 1667e4c08344
children e90a783a4e8b
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47:1667e4c08344 48:fc7a28de6aa0
7 <requirement type="package" version="1.0.1">snp-pipeline</requirement> 7 <requirement type="package" version="1.0.1">snp-pipeline</requirement>
8 <requirement type="package" version="3.7.3">python</requirement> 8 <requirement type="package" version="3.7.3">python</requirement>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && 11 export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
12 # env &&
13 python $__tool_directory__/snp-wind.py ./ 12 python $__tool_directory__/snp-wind.py ./
14 #for $call in $calls 13 #for $call in $calls
15 -n $call.element_identifier -f $call 14 -n $call.element_identifier -f $call
16 #end for 15 #end for
17 -p "var.fit.vcf" > ./file 16 -p "var.fit.vcf" > ./file