Mercurial > repos > jpayne > snp_pipeline

diff 7_smp_matrix.xml @ 40:02733e77f84f

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Wed, 14 Feb 2018 13:10:23 -0500
parents a057e69d13a7
children f58616a4b2f3
line wrap: on
line diff
--- a/7_smp_matrix.xml	Wed Feb 14 13:06:44 2018 -0500
+++ b/7_smp_matrix.xml	Wed Feb 14 13:10:23 2018 -0500
@@ -8,6 +8,8 @@
         <!-- <requirement type="package" version="3.5">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
+        export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
+        env &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.fasta"
             #for $fa in sorted($cons, key=lambda f: f.element_identifier)
                 -n $fa.element_identifier -f $fa