Mercurial > repos > jpayne > snp_pipeline

diff 1_map_reads.xml @ 39:1fe3b14f7f1b

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Wed, 14 Feb 2018 13:06:44 -0500
parents 69216317baa7
children 02733e77f84f
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--- a/1_map_reads.xml	Mon Feb 05 13:25:39 2018 -0500
+++ b/1_map_reads.xml	Wed Feb 14 13:06:44 2018 -0500
@@ -7,6 +7,7 @@
         <!-- <requirement type="package" version="3.5">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
+        env &&
         #if $reads.reads_select == 'collection'
             export files="$reads.coll.forward $reads.coll.reverse"          &&
             export params="-1 $reads.coll.forward -2 $reads.coll.reverse"   &&