Mercurial > repos > jpayne > snp_pipeline

diff 1_map_reads.xml @ 9:41bd2a5793ee

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Tue, 30 Jan 2018 15:55:32 -0500
parents 360e1c2bf24d
children 25b858c2f21d
line wrap: on
line diff
--- a/1_map_reads.xml	Tue Jan 30 12:33:48 2018 -0500
+++ b/1_map_reads.xml	Tue Jan 30 15:55:32 2018 -0500
@@ -3,7 +3,7 @@
     <requirements>
         <requirement type="package" version="2.3.4">bowtie2</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.5">python</requirement>
+        <requirement type="package" version="3.4">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #if $reads.reads_select == 'collection'
@@ -13,7 +13,7 @@
             export files="$forward $reverse"                    &&
             export params="-1 $forward -2 $reverse"             &&
         #end if
-        ${__tool_directory__}/snp-cache.py snp_mapped_reads 
+        python ${__tool_directory__}/snp-cache.py snp_mapped_reads 
             "\$(md5sum  $reference
                         \$files 
                         | cut -c -32 | md5sum | cut -c -32)"