Mercurial > repos > jpayne > snp_pipeline

diff 5_call_consensus.xml @ 9:41bd2a5793ee

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Tue, 30 Jan 2018 15:55:32 -0500
parents 360e1c2bf24d
children 25b858c2f21d
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line diff
--- a/5_call_consensus.xml	Tue Jan 30 12:33:48 2018 -0500
+++ b/5_call_consensus.xml	Tue Jan 30 15:55:32 2018 -0500
@@ -3,11 +3,11 @@
     <requirements>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.5">python</requirement>
+        <requirement type="package" version="3.4">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #set $identifier = $call_pileup.name.split(' ')[0]
-        $__tool_directory__/snp-cache.py snp_consenus_calls
+        python $__tool_directory__/snp-cache.py snp_consenus_calls
             "\$(md5sum $snps $calls $call_pileup | cut -c -32 | md5sum | cut -c -32)"
             -c "
                 mkdir ./$identifier/