Mercurial > repos > jpayne > snp_pipeline

diff 6_merge_vcfs.xml @ 9:41bd2a5793ee

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Tue, 30 Jan 2018 15:55:32 -0500
parents 360e1c2bf24d
children 25b858c2f21d
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--- a/6_merge_vcfs.xml	Tue Jan 30 12:33:48 2018 -0500
+++ b/6_merge_vcfs.xml	Tue Jan 30 15:55:32 2018 -0500
@@ -4,10 +4,10 @@
         <requirement type="package" version="1.3.1">bcftools</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package">tabix</requirement>
-        <requirement type="package" version="3.5">python</requirement>
+        <requirement type="package" version="3.4">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
+        python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
             #for $vcf in $vcfs
                 -n $vcf.element_identifier -f $vcf
             #end for