Mercurial > repos > jpayne > snp_pipeline

diff 7_smp_matrix.xml @ 19:4bb7e4a360bc

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Wed, 31 Jan 2018 12:38:03 -0500
parents 97abaa8b8384
children 87f53c4a13df
line wrap: on
line diff
--- a/7_smp_matrix.xml	Wed Jan 31 12:33:00 2018 -0500
+++ b/7_smp_matrix.xml	Wed Jan 31 12:38:03 2018 -0500
@@ -8,11 +8,6 @@
         <requirement type="package" version="3.4">python3</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        env &&
-        which bcftools &&
-        which bunzip    &&
-        which snp-pipeline &&
-        which python   &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.fasta"
             #for $fa in sorted($cons, key=lambda f: f.element_identifier)
                 -n $fa.element_identifier -f $fa