Mercurial > repos > jpayne > snp_pipeline

diff 6_merge_vcfs.xml @ 22:54255ae587ec

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Wed, 31 Jan 2018 12:57:26 -0500
parents 46b274d082a9
children 43113449a74f
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--- a/6_merge_vcfs.xml	Wed Jan 31 12:50:31 2018 -0500
+++ b/6_merge_vcfs.xml	Wed Jan 31 12:57:26 2018 -0500
@@ -9,9 +9,6 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         env &&
-        which bcftools &&
-        which snp-pipeline &&
-        which python   &&
         ldconfig -p | grep "libbz2.so*" &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
             #for $vcf in $vcfs