Mercurial > repos > jpayne > snp_pipeline

diff 6_merge_vcfs.xml @ 51:568eb62c7524

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planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty
author jpayne
date Tue, 17 Sep 2019 11:06:59 -0400
parents e90a783a4e8b
children 0acc1975bbeb
line wrap: on
line diff
--- a/6_merge_vcfs.xml	Thu May 09 11:45:22 2019 -0400
+++ b/6_merge_vcfs.xml	Tue Sep 17 11:06:59 2019 -0400
@@ -10,8 +10,6 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
-        ls -lah \$CONDA_DEFAULT_ENV/bin &&
-        ls -lah \$CONDA_DEFAULT_ENV/lib &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
             #for $vcf in $vcfs
                 -n $vcf.element_identifier -f $vcf