Mercurial > repos > jpayne > snp_pipeline

diff 7_smp_matrix.xml @ 18:97abaa8b8384

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Wed, 31 Jan 2018 12:33:00 -0500
parents 8626ed5eb356
children 4bb7e4a360bc
line wrap: on
line diff
--- a/7_smp_matrix.xml	Wed Jan 31 12:32:01 2018 -0500
+++ b/7_smp_matrix.xml	Wed Jan 31 12:33:00 2018 -0500
@@ -9,6 +9,10 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         env &&
+        which bcftools &&
+        which bunzip    &&
+        which snp-pipeline &&
+        which python   &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.fasta"
             #for $fa in sorted($cons, key=lambda f: f.element_identifier)
                 -n $fa.element_identifier -f $fa