Mercurial > repos > jpayne > snp_pipeline

diff 6_merge_vcfs.xml @ 33:b6bc9158666c

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Thu, 01 Feb 2018 17:46:04 -0500
parents e8b3f4f646b1
children 87f53c4a13df
line wrap: on
line diff
--- a/6_merge_vcfs.xml	Thu Feb 01 16:20:17 2018 -0500
+++ b/6_merge_vcfs.xml	Thu Feb 01 17:46:04 2018 -0500
@@ -11,7 +11,7 @@
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
         env &&
-        ls -lah \$CONDA_DEFAULT_ENV &&
+        ls -lah \$CONDA_DEFAULT_ENV/bin &&
         ls -lah \$CONDA_DEFAULT_ENV/lib &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
             #for $vcf in $vcfs