Mercurial > repos > jpayne > snp_pipeline

diff 6_merge_vcfs.xml @ 24:cf6f7548f15a

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Wed, 31 Jan 2018 13:08:27 -0500
parents 43113449a74f
children f986ff235d69
line wrap: on
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--- a/6_merge_vcfs.xml	Wed Jan 31 13:01:06 2018 -0500
+++ b/6_merge_vcfs.xml	Wed Jan 31 13:08:27 2018 -0500
@@ -9,6 +9,7 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         env &&
+        export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$CONDA_DEFAULT/lib" &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
             #for $vcf in $vcfs
                 -n $vcf.element_identifier -f $vcf