Mercurial > repos > jpayne > snp_pipeline

diff 2_call_sites.xml @ 62:d497922d6caa

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planemo upload
author jpayne
date Fri, 28 Jun 2024 00:26:24 -0400
parents 2af5e948dd5c
children
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--- a/2_call_sites.xml	Wed Jun 26 00:58:54 2024 -0400
+++ b/2_call_sites.xml	Fri Jun 28 00:26:24 2024 -0400
@@ -1,13 +1,13 @@
 <tool id="call_sites" name="2. Call Sites" version="1.0.1" profile="16.10">
     <description>of high-confidence SNPs, or lookup cached sitecall</description>
     <requirements>
-        <!-- <container type="docker">quay.io/biocontainers/mulled-v2-e518cb713b80020daa244e2ce559c37edb42dcde:5cb90165033bd74a97d0a807f439cf4b1aaabb89-0</container> -->
-        <requirement type="package" version="2.4.5">bowtie2</requirement>
+        <container type="docker">quay.io/staphb/cfsan-snp-pipeline</container>
+        <!-- <requirement type="package" version="2.4.5">bowtie2</requirement>
         <requirement type="package" version="1.9">samtools</requirement>
         <requirement type="package" version="1.0.8">bzip2</requirement>
         <requirement type="package" version="2.27.4">picard</requirement>
         <requirement type="package" version="2.4.4">varscan</requirement>
-        <!-- <requirement type="package" version="1.9.134">boto3</requirement> -->
+        <requirement type="package" version="1.9.134">boto3</requirement> -->
         <!-- <requirement type="package" version="3.6.8">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[