Mercurial > repos > jpayne > snp_pipeline

diff 1_map_reads.xml @ 58:d53281e6edae

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planemo upload
author jpayne
date Mon, 17 Jun 2024 02:57:10 -0400
parents e90a783a4e8b
children 49d672730d3e
line wrap: on
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--- a/1_map_reads.xml	Fri Nov 06 12:50:48 2020 -0500
+++ b/1_map_reads.xml	Mon Jun 17 02:57:10 2024 -0400
@@ -1,10 +1,11 @@
 <tool id="map_reads" name="1. Map Reads" version="1.0.1" profile="16.10">
     <description>to index, or lookup cached alignment</description>
     <requirements>
-        <requirement type="package" version="1.0.6">bzip2</requirement>
-        <requirement type="package" version="2.3.5">bowtie2</requirement>
+        <container type="docker">quay.io/biocontainers/mulled-v2-d736175c8392ecaa2a26c372df9ad15b78f8d5b8:d59a38d618c862df52cf9dae223ed9d93ed7225b-0</container>
+        <requirement type="package" version="1.0.8">bzip2</requirement>
+        <requirement type="package" version="2.4.5">bowtie2</requirement>
         <requirement type="package" version="1.9.134">boto3</requirement>
-        <requirement type="package" version="3.6.8">python</requirement>
+        <!-- <requirement type="package" version="3.6.8">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&