Mercurial > repos > jpayne > snp_pipeline

diff 2_call_sites.xml @ 58:d53281e6edae

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planemo upload
author jpayne
date Mon, 17 Jun 2024 02:57:10 -0400
parents e90a783a4e8b
children 49d672730d3e
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line diff
--- a/2_call_sites.xml	Fri Nov 06 12:50:48 2020 -0500
+++ b/2_call_sites.xml	Mon Jun 17 02:57:10 2024 -0400
@@ -1,13 +1,14 @@
 <tool id="call_sites" name="2. Call Sites" version="1.0.1" profile="16.10">
     <description>of high-confidence SNPs, or lookup cached sitecall</description>
     <requirements>
-        <requirement type="package" version="2.3.5">bowtie2</requirement>
+        <container type="docker">quay.io/biocontainers/mulled-v2-e518cb713b80020daa244e2ce559c37edb42dcde:5cb90165033bd74a97d0a807f439cf4b1aaabb89-0</container>
+        <requirement type="package" version="2.4.5">bowtie2</requirement>
         <requirement type="package" version="1.9">samtools</requirement>
-        <requirement type="package" version="1.0.6">bzip2</requirement>
-        <requirement type="package">picard</requirement>
-        <requirement type="package">varscan</requirement>
+        <requirement type="package" version="1.0.8">bzip2</requirement>
+        <requirement type="package" version="2.27.4">picard</requirement>
+        <requirement type="package" version="2.4.4">varscan</requirement>
         <requirement type="package" version="1.9.134">boto3</requirement>
-        <requirement type="package" version="3.6.8">python</requirement>
+        <!-- <requirement type="package" version="3.6.8">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
     export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&