--- a/4_merge_sites.xml	Fri Nov 06 12:50:48 2020 -0500
+++ b/4_merge_sites.xml	Mon Jun 17 02:57:10 2024 -0400
@@ -1,11 +1,12 @@
 <tool id="merge_sites" name="4. Merge Sites" version="1.0.1" profile="16.10">
     <description>from multiple samples</description>
     <requirements>
-        <requirement type="package" version="2.3.5">bowtie2</requirement>
+        <container type="docker">quay.io/biocontainers/mulled-v2-a9689be5d4f7dc232fcd76f2f32bef2b80afcb49:0560aee94873e022862623c7766c9634a09b9513-0</container>
+        <requirement type="package" version="2.4.5">bowtie2</requirement>
         <requirement type="package" version="1.9">samtools</requirement>
-        <requirement type="package" version="1.0.6">bzip2</requirement>
-        <requirement type="package" version="2.0.2">snp-pipeline</requirement>
-        <requirement type="package" version="3.6.8">python</requirement>
+        <requirement type="package" version="1.0.8">bzip2</requirement>
+        <requirement type="package" version="2.2.1">snp-pipeline</requirement>
+        <!-- <requirement type="package" version="3.6.8">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
@@ -32,7 +33,7 @@
                     <element name="sample4" value="samples/sample4/var.flt_preserved.vcf" ftype="fastqsanger" />
                 </collection>
             </param>
-            <!-- <output name="snplist" value="snplist.txt" /> -->
+            <output name="snplist" value="snplist.txt" />
         </test>
     </tests>
     <help><![CDATA[