Mercurial > repos > jpayne > snp_pipeline

diff 5_call_consensus.xml @ 58:d53281e6edae

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planemo upload
author jpayne
date Mon, 17 Jun 2024 02:57:10 -0400
parents e90a783a4e8b
children 49d672730d3e
line wrap: on
line diff
--- a/5_call_consensus.xml	Fri Nov 06 12:50:48 2020 -0500
+++ b/5_call_consensus.xml	Mon Jun 17 02:57:10 2024 -0400
@@ -1,10 +1,11 @@
 <tool id="call_consensus" name="5. Call consensus SNPs" version="1.0.1" profile="16.10">
     <description>for a sample, or lookup cached consensus SNP calls</description>
     <requirements>
-        <requirement type="package" version="1.0.6">bzip2</requirement>
-        <requirement type="package" version="2.0.2">snp-pipeline</requirement>
+        <container type="docker">quay.io/biocontainers/mulled-v2-fe715cf36e5a6063362b28e50f1f4a1a767770d5:8f94687b7d8826f1473b7e97df0cea2a960b35bf-0</container>
+        <requirement type="package" version="1.0.8">bzip2</requirement>
+        <requirement type="package" version="2.2.1">snp-pipeline</requirement>
         <requirement type="package" version="1.9.134">boto3</requirement>
-        <requirement type="package" version="3.6.8">python</requirement>
+        <!-- <requirement type="package" version="3.6.8">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&