Mercurial > repos > jpayne > snp_pipeline

diff 6_merge_vcfs.xml @ 58:d53281e6edae

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planemo upload
author jpayne
date Mon, 17 Jun 2024 02:57:10 -0400
parents d3095ad12f24
children 49d672730d3e
line wrap: on
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--- a/6_merge_vcfs.xml	Fri Nov 06 12:50:48 2020 -0500
+++ b/6_merge_vcfs.xml	Mon Jun 17 02:57:10 2024 -0400
@@ -1,12 +1,13 @@
 <tool id="merge_vcfs" name="6. Merge VCFs" version="1.0.1" profile="16.10">
     <description>into a multi-sample VCF with consensus SNPs</description>
     <requirements>
+        <container type="docker">quay.io/biocontainers/mulled-v2-72d480da2f80e0804df2fc75273988c6dba1648d:f354c444b518b0ada8e031aa2984346e2f5d8837-0</container>
         <requirement type="package" version="1.9">bcftools</requirement>
-        <requirement type="package" version="1.0.6">bzip2</requirement>
-        <requirement type="package" version="2.0.2">snp-pipeline</requirement>
-        <requirement type="package" version="0.2.5">tabix</requirement>
+        <requirement type="package" version="1.0.8">bzip2</requirement>
+        <requirement type="package" version="2.2.1">snp-pipeline</requirement>
+        <requirement type="package" version="0.2.6">tabix</requirement>
         <requirement type="package" version="1.9">htslib</requirement>
-        <requirement type="package" version="3.6.8">python</requirement>
+        <!-- <requirement type="package" version="3.6.8">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&