Mercurial > repos > jpayne > snp_pipeline
diff test-data/samples/sample1/reads.sam @ 58:d53281e6edae
planemo upload
| author | jpayne |
|---|---|
| date | Mon, 17 Jun 2024 02:57:10 -0400 |
| parents | eefdd97a6749 |
| children |
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--- a/test-data/samples/sample1/reads.sam Fri Nov 06 12:50:48 2020 -0500 +++ b/test-data/samples/sample1/reads.sam Mon Jun 17 02:57:10 2024 -0400 @@ -1,6 +1,6 @@ @HD VN:1.0 SO:unsorted @SQ SN:gi|9626243|ref|NC_001416.1| LN:48502 -@PG ID:bowtie2 PN:bowtie2 VN:2.3.3.1 CL:"/usr/local/bin/bowtie2-align-s --wrapper basic-0 --reorder -X 1000 -p 2 -x reference/lambda_virus -1 samples/sample1/sample1_1.fastq -2 samples/sample1/sample1_2.fastq" +@PG ID:bowtie2 PN:bowtie2 VN:2.3.5.1 CL:"/home/chet/miniconda3/envs/mulled-v1-3aaacfa732fb5a9a4edb89d75dc27c600fe12abcc61b59ef7e28f09be834e1ba/bin/bowtie2-align-s --wrapper basic-0 -q -x ./reference -p 1 --reorder -X 1000 -1 ./forward.gz -2 ./reverse.gz" r1 83 gi|9626243|ref|NC_001416.1| 16266 42 97M = 16003 -360 GCAATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGCGTCTGTGGGATTTGCTGACCCATCCGCGCTACGGC *5:441C0)"E,A%72$9-"1%A:8%-0<80-;6H8%7643HB>9*;8BED.D#.2?44:4'5)0<6F6F1*C71A.D;G0G<2<9.6/B:3")?4' AS:i:-6 XN:i:0 XM:i:2 XO:i:0 XG:i:0 NM:i:2 MD:Z:61T11A23 YS:i:0 YT:Z:CP r1 163 gi|9626243|ref|NC_001416.1| 16003 42 58M = 16266 360 GTGGTGATGGGTAACCTGCCGCCGCGCCCGTTTAATATCCGGATGCGCAGGATGACGC );A!/,6B:8=(*2GE1FGA>0/,?>),%.,/3+@D(C=<53!$H"HE-$79*HD?4< AS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:58 YS:i:-6 YT:Z:CP r2 83 gi|9626243|ref|NC_001416.1| 35315 42 60M = 35108 -267 CCTGTTTCTCTGCGNGACGTTCGCGGCGGCGTNTTTGTGCATCCATCTGGATTCTCCTGT E*CD88'0F(71,0A>GA4:@@+CB%@/8369*H2%!"0CE/BE<:4F)3&1BF&:*7#2 AS:i:-2 XN:i:0 XM:i:2 XO:i:0 XG:i:0 NM:i:2 MD:Z:14C17G27 YS:i:-6 YT:Z:CP