Mercurial > repos > jpayne > snp_pipeline

diff 6_merge_vcfs.xml @ 29:e488850b2507

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Wed, 31 Jan 2018 14:38:58 -0500
parents 1d77f9fb51f3
children 6f984cc0e232
line wrap: on
line diff
--- a/6_merge_vcfs.xml	Wed Jan 31 13:34:32 2018 -0500
+++ b/6_merge_vcfs.xml	Wed Jan 31 14:38:58 2018 -0500
@@ -11,7 +11,7 @@
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
         env &&
         ls -lah \$CONDA_DEFAULT_ENV &&
-        ls -lah \$CONDA_DEFAULT_ENV\lib &&
+        ls -lah \$CONDA_DEFAULT_ENV/lib &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"
             #for $vcf in $vcfs
                 -n $vcf.element_identifier -f $vcf