Mercurial > repos > jpayne > snp_pipeline

diff 6_merge_vcfs.xml @ 32:e8b3f4f646b1

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Thu, 01 Feb 2018 16:20:17 -0500
parents c272b12525a6
children b6bc9158666c
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--- a/6_merge_vcfs.xml	Thu Feb 01 16:09:52 2018 -0500
+++ b/6_merge_vcfs.xml	Thu Feb 01 16:20:17 2018 -0500
@@ -1,12 +1,12 @@
 <tool id="merge_vcfs" name="6. Merge VCFs" version="1.0.1" profile="16.10">
     <description>into a multi-sample VCF with consensus SNPs</description>
     <requirements>
-        <requirement type="package" version="1.6">samtools</requirement>
         <requirement type="package" version="1.6">bcftools</requirement>
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
-        <requirement type="package">tabix</requirement>
+        <requirement type="package" version="0.2.5">tabix</requirement>
         <requirement type="package" version="3.4">python3</requirement>
+        <requirement type="package" version="1.6">htslib</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&