Mercurial > repos > jpayne > snp_pipeline

diff 6_merge_vcfs.xml @ 50:e90a783a4e8b

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planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty
author jpayne
date Thu, 09 May 2019 11:45:22 -0400
parents fc7a28de6aa0
children 568eb62c7524
line wrap: on
line diff
--- a/6_merge_vcfs.xml	Wed May 08 11:43:17 2019 -0400
+++ b/6_merge_vcfs.xml	Thu May 09 11:45:22 2019 -0400
@@ -1,12 +1,12 @@
 <tool id="merge_vcfs" name="6. Merge VCFs" version="1.0.1" profile="16.10">
     <description>into a multi-sample VCF with consensus SNPs</description>
     <requirements>
-        <requirement type="package" version="1.6">bcftools</requirement>
+        <requirement type="package" version="1.9">bcftools</requirement>
         <requirement type="package" version="1.0.6">bzip2</requirement>
-        <requirement type="package" version="1.0.1">snp-pipeline</requirement>
+        <requirement type="package" version="2.0.2">snp-pipeline</requirement>
         <requirement type="package" version="0.2.5">tabix</requirement>
-        <requirement type="package" version="1.6">htslib</requirement>
-        <requirement type="package" version="3.7.3">python</requirement>
+        <requirement type="package" version="1.9">htslib</requirement>
+        <requirement type="package" version="3.6.8">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
@@ -36,7 +36,7 @@
                     <element name="sample4" value="samples/sample4/consensus.vcf" />
                 </collection>
             </param>
-            <output name="snpmav" value="snpma.vcf" lines_diff="2" />
+            <output name="snpmav" value="snpma.vcf" lines_diff="4" />
         </test>
     </tests>
     <help><![CDATA[