Mercurial > repos > jpayne > snp_pipeline

diff 5_call_consensus.xml @ 49:ebfa7fd256aa

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planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty
author jpayne
date Wed, 08 May 2019 11:43:17 -0400
parents fc7a28de6aa0
children e90a783a4e8b
line wrap: on
line diff
--- a/5_call_consensus.xml	Wed May 08 11:10:14 2019 -0400
+++ b/5_call_consensus.xml	Wed May 08 11:43:17 2019 -0400
@@ -9,7 +9,7 @@
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
         #set $identifier = $call_pileup.name.split(' ')[0]
-        python $__tool_directory__/snp-cache.py snp_consenus_calls
+        python3 $__tool_directory__/snp-cache.py snp_consenus_calls
             "\$(md5sum $snps $calls $call_pileup | cut -c -32 | md5sum | cut -c -32)"
             -c "
                 mkdir ./$identifier/