Mercurial > repos > jpayne > snp_pipeline
diff CFSAN_SNP_Pipeline.ga @ 0:eefdd97a6749
planemo upload commit b'7f6183b769772449fbcee903686b8d5ec5b7439f\n'-dirty
| author | jpayne |
|---|---|
| date | Wed, 24 Jan 2018 14:18:21 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/CFSAN_SNP_Pipeline.ga Wed Jan 24 14:18:21 2018 -0500 @@ -0,0 +1,750 @@ +{ + "a_galaxy_workflow": "true", + "annotation": "", + "format-version": "0.1", + "name": "CFSAN SNP Pipeline", + "steps": { + "0": { + "annotation": "", + "content_id": null, + "errors": null, + "id": 0, + "input_connections": {}, + "inputs": [], + "label": "Reference FASTA", + "name": "Input dataset", + "outputs": [], + "position": { + "left": 241.5, + "top": 381 + }, + "tool_id": null, + "tool_state": "{}", + "tool_version": null, + "type": "data_input", + "uuid": "024fcab7-2daf-4b89-9730-614ee2737db8", + "workflow_outputs": [ + { + "label": null, + "output_name": "output", + "uuid": "87db8281-092f-4f81-be41-152af355ebd6" + } + ] + }, + "1": { + "annotation": "", + "content_id": null, + "errors": null, + "id": 1, + "input_connections": {}, + "inputs": [], + "label": "Collection of Paired-End Reads", + "name": "Input dataset collection", + "outputs": [], + "position": { + "left": 222, + "top": 746 + }, + "tool_id": null, + "tool_state": "{\"collection_type\": \"list:paired\"}", + "tool_version": null, + "type": "data_collection_input", + "uuid": "66a18e16-33f7-4488-ac17-508725a58279", + "workflow_outputs": [ + { + "label": null, + "output_name": "output", + "uuid": "1a3c2f8a-e443-44cc-8490-35ebb5a9ebc4" + } + ] + }, + "2": { + "annotation": "", + "content_id": "map_reads", + "errors": null, + "id": 2, + "input_connections": { + "reads|coll": { + "id": 1, + "output_name": "output" + }, + "source|reference": { + "id": 0, + "output_name": "output" + } + }, + "inputs": [ + { + "description": "runtime parameter for tool 1. 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