Mercurial > repos > jpayne > snp_pipeline

diff 5_call_consensus.xml @ 45:f58616a4b2f3

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty
author jpayne
date Tue, 07 May 2019 11:44:12 -0400
parents 02733e77f84f
children d273453b30bb
line wrap: on
line diff
--- a/5_call_consensus.xml	Wed Apr 25 16:35:27 2018 -0400
+++ b/5_call_consensus.xml	Tue May 07 11:44:12 2019 -0400
@@ -4,11 +4,11 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="1.5.11">boto3</requirement>
-        <!-- <requirement type="package" version="3.5">python</requirement> -->
+        <requirement type="package" version="3.6">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
-        env &&
+        # env &&
         #set $identifier = $call_pileup.name.split(' ')[0]
         python $__tool_directory__/snp-cache.py snp_consenus_calls
             "\$(md5sum $snps $calls $call_pileup | cut -c -32 | md5sum | cut -c -32)"