Mercurial > repos > jpayne > snp_pipeline
diff 6_merge_vcfs.xml @ 45:f58616a4b2f3
planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty
author | jpayne |
---|---|
date | Tue, 07 May 2019 11:44:12 -0400 |
parents | 69216317baa7 |
children | d273453b30bb |
line wrap: on
line diff
--- a/6_merge_vcfs.xml Wed Apr 25 16:35:27 2018 -0400 +++ b/6_merge_vcfs.xml Tue May 07 11:44:12 2019 -0400 @@ -5,12 +5,12 @@ <requirement type="package" version="1.0.6">bzip2</requirement> <requirement type="package" version="1.0.1">snp-pipeline</requirement> <requirement type="package" version="0.2.5">tabix</requirement> - <!-- <requirement type="package" version="3.5">python</requirement> --> + <requirement type="package" version="3.6">python</requirement> <requirement type="package" version="1.6">htslib</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && - env && + # env && ls -lah \$CONDA_DEFAULT_ENV/bin && ls -lah \$CONDA_DEFAULT_ENV/lib && python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"