diff 6_merge_vcfs.xml @ 45:f58616a4b2f3

planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty
author jpayne
date Tue, 07 May 2019 11:44:12 -0400
parents 69216317baa7
children d273453b30bb
line wrap: on
line diff
--- a/6_merge_vcfs.xml	Wed Apr 25 16:35:27 2018 -0400
+++ b/6_merge_vcfs.xml	Tue May 07 11:44:12 2019 -0400
@@ -5,12 +5,12 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="0.2.5">tabix</requirement>
-        <!-- <requirement type="package" version="3.5">python</requirement> -->
+        <requirement type="package" version="3.6">python</requirement>
         <requirement type="package" version="1.6">htslib</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
-        env &&
+        # env &&
         ls -lah \$CONDA_DEFAULT_ENV/bin &&
         ls -lah \$CONDA_DEFAULT_ENV/lib &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.vcf"