Mercurial > repos > jpayne > snp_pipeline

diff 7_smp_matrix.xml @ 45:f58616a4b2f3

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planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty
author jpayne
date Tue, 07 May 2019 11:44:12 -0400
parents 02733e77f84f
children d273453b30bb
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--- a/7_smp_matrix.xml	Wed Apr 25 16:35:27 2018 -0400
+++ b/7_smp_matrix.xml	Tue May 07 11:44:12 2019 -0400
@@ -5,11 +5,11 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="0.2.5">tabix</requirement>
-        <!-- <requirement type="package" version="3.5">python</requirement> -->
+        <requirement type="package" version="3.6">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
-        env &&
+        # env &&
         python $__tool_directory__/snp-wind.py ./ -p "consensus.fasta"
             #for $fa in sorted($cons, key=lambda f: f.element_identifier)
                 -n $fa.element_identifier -f $fa