Mercurial > repos > jpayne > snp_pipeline

diff 5_call_consensus.xml @ 48:fc7a28de6aa0

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planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty
author jpayne
date Wed, 08 May 2019 11:10:14 -0400
parents 1667e4c08344
children ebfa7fd256aa
line wrap: on
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--- a/5_call_consensus.xml	Tue May 07 16:12:09 2019 -0400
+++ b/5_call_consensus.xml	Wed May 08 11:10:14 2019 -0400
@@ -8,7 +8,6 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
-        # env &&
         #set $identifier = $call_pileup.name.split(' ')[0]
         python $__tool_directory__/snp-cache.py snp_consenus_calls
             "\$(md5sum $snps $calls $call_pileup | cut -c -32 | md5sum | cut -c -32)"