Mercurial > repos > jpayne > snp_pipeline

view test-data/samples/sample1/metrics @ 43:62531f7399dc

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planemo upload commit 0399c6bd696435a7a99d8d8b4c237e5a78ee5856-dirty
author jpayne
date Wed, 25 Apr 2018 15:54:10 -0400
parents eefdd97a6749
children
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sample="sample1"
fastqFileList="sample1_1.fastq, sample1_2.fastq"
fastqFileSize=4818902
machine=
flowcell=
numberReads=20000
numberDupReads=110
percentReadsMapped=94.55
aveInsertSize=286.84
avePileupDepth=23.22
phase1Snps=46
phase1SnpsPreserved=32
snps=46
snpsPreserved=32
missingPos=0
missingPosPreserved=0
excludedSample=
excludedSamplePreserved=
errorList=""