Mercurial > repos > jpayne > snp_pipeline

view test-data/samples/sample3/metrics @ 43:62531f7399dc

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planemo upload commit 0399c6bd696435a7a99d8d8b4c237e5a78ee5856-dirty
author jpayne
date Wed, 25 Apr 2018 15:54:10 -0400
parents eefdd97a6749
children
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sample="sample3"
fastqFileList="sample3_1.fastq, sample3_2.fastq"
fastqFileSize=4774974
machine=
flowcell=
numberReads=20000
numberDupReads=118
percentReadsMapped=94.43
aveInsertSize=284.48
avePileupDepth=22.55
phase1Snps=38
phase1SnpsPreserved=35
snps=38
snpsPreserved=35
missingPos=0
missingPosPreserved=0
excludedSample=
excludedSamplePreserved=
errorList=""