Mercurial > repos > jpayne > snp_pipeline

view test-data/samples/sample1/metrics @ 38:a057e69d13a7

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Mon, 05 Feb 2018 13:25:39 -0500
parents eefdd97a6749
children
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sample="sample1"
fastqFileList="sample1_1.fastq, sample1_2.fastq"
fastqFileSize=4818902
machine=
flowcell=
numberReads=20000
numberDupReads=110
percentReadsMapped=94.55
aveInsertSize=286.84
avePileupDepth=23.22
phase1Snps=46
phase1SnpsPreserved=32
snps=46
snpsPreserved=32
missingPos=0
missingPosPreserved=0
excludedSample=
excludedSamplePreserved=
errorList=""