Mercurial > repos > jpayne > snp_pipeline
directory /test-data/samples/sample3/ @ 24:cf6f7548f15a
name | size | permissions |
---|---|---|
[up] | drwxr-xr-x | |
consensus.fasta | 177 | -rw-r--r-- |
consensus.vcf | 19464 | -rw-r--r-- |
consensus_preserved.fasta | 148 | -rw-r--r-- |
consensus_preserved.vcf | 16671 | -rw-r--r-- |
duplicate_reads_metrics.txt | 2920 | -rw-r--r-- |
metrics | 362 | -rw-r--r-- |
reads.all.pileup | 4193444 | -rw-r--r-- |
reads.sam | 7242946 | -rw-r--r-- |
reads.sorted.bam | 2518787 | -rw-r--r-- |
reads.sorted.deduped.bam | 2537579 | -rw-r--r-- |
reads.unsorted.bam | 3037813 | -rw-r--r-- |
sample3_1.fastq | 2389868 | -rw-r--r-- |
sample3_2.fastq | 2385106 | -rw-r--r-- |
var.flt.vcf | 8889 | -rw-r--r-- |
var.flt_preserved.vcf | 8363 | -rw-r--r-- |
var.flt_removed.vcf | 2682 | -rw-r--r-- |