Mercurial > repos > jpayne > snp_pipeline
directory /test-data/samples/sample1/ @ 32:e8b3f4f646b1
| name | size | permissions |
|---|---|---|
| [up] | drwxr-xr-x | |
 consensus.fasta
|
177 | -rw-r--r-- |
|
consensus.vcf
|
19468 | -rw-r--r-- |
|
consensus_preserved.fasta
|
148 | -rw-r--r-- |
|
consensus_preserved.vcf
|
17904 | -rw-r--r-- |
|
duplicate_reads_metrics.txt
|
2921 | -rw-r--r-- |
|
metrics
|
362 | -rw-r--r-- |
|
reads.all.pileup
|
4259329 | -rw-r--r-- |
|
reads.sam
|
7285613 | -rw-r--r-- |
|
reads.sorted.bam
|
2540773 | -rw-r--r-- |
|
reads.sorted.deduped.bam
|
2561179 | -rw-r--r-- |
|
reads.unsorted.bam
|
3069427 | -rw-r--r-- |
|
sample1_1.fastq
|
2411686 | -rw-r--r-- |
|
sample1_2.fastq
|
2407216 | -rw-r--r-- |
|
var.flt.vcf
|
10308 | -rw-r--r-- |
|
var.flt_preserved.vcf
|
7838 | -rw-r--r-- |
|
var.flt_removed.vcf
|
4626 | -rw-r--r-- |