jpayne@0: sample="sample3" jpayne@0: fastqFileList="sample3_1.fastq, sample3_2.fastq" jpayne@0: fastqFileSize=4774974 jpayne@0: machine= jpayne@0: flowcell= jpayne@0: numberReads=20000 jpayne@0: numberDupReads=118 jpayne@0: percentReadsMapped=94.43 jpayne@0: aveInsertSize=284.48 jpayne@0: avePileupDepth=22.55 jpayne@0: phase1Snps=38 jpayne@0: phase1SnpsPreserved=35 jpayne@0: snps=38 jpayne@0: snpsPreserved=35 jpayne@0: missingPos=0 jpayne@0: missingPosPreserved=0 jpayne@0: excludedSample= jpayne@0: excludedSamplePreserved= jpayne@0: errorList=""