jpayne@0: jpayne@0: for a sample, or lookup cached consensus SNP calls jpayne@0: jpayne@61: jpayne@61: bzip2 jpayne@58: snp-pipeline jpayne@61: jpayne@58: jpayne@0: jpayne@0: &2 && tar zcv ./consensus.vcf ./consensus.fasta jpayne@0: " jpayne@0: -l $cache_log jpayne@0: | tar zvx ./ jpayne@0: && cp ./consensus.fasta $calls_consensus_fa jpayne@0: && cp ./consensus.vcf $calls_consensus_vcf jpayne@0: && cat $cache_log jpayne@0: ]]> jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@0: jpayne@50: jpayne@0: jpayne@0: jpayne@0: jpayne@0: http://snp-pipeline.readthedocs.io/en/latest/index.html jpayne@0: ]]> jpayne@0: jpayne@0: 10.7717/peerj-cs.20 jpayne@0: jpayne@0: